Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F16
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 132 8e-32
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 117 2e-27
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 27 4.5
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 6.0
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 26 7.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 7.9
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 132 bits (318), Expect = 8e-32
Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 2/254 (0%)
Frame = +3
Query: 9 YEKLYKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKA 188
Y K Y P++++R+ +V G EP ++E ++ E A + T E KK +
Sbjct: 107 YAKKYAPIFKRRSEVVRGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG 158
Query: 189 IEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFY 368
+ KGIP+FW +NV LSEM+ DE L L DI++ E P F LEF
Sbjct: 159 ------DDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFE 211
Query: 369 FAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS-CKGCEINWNAGXXXXXXXXXXX 545
FA N +FTN +LTK Y +E P +Y +G +++W
Sbjct: 212 FAENPFFTNKILTKTYYYM---EESGP---SNVFLYDHAEGDKVDWKENADLTVRTVTKK 265
Query: 546 XXXXSRGSVRTVTKSVQADSFFNFFNPPTLP-EDPNSTVASDVQALLTADFEIGHYIRER 722
+ R V SV DSFFNFFNPPT P E+ + + ++ LL D++IG +E+
Sbjct: 266 QRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEK 325
Query: 723 VVSRAVLLYTGEGL 764
++ RAV +TGE L
Sbjct: 326 LIPRAVEWFTGEAL 339
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 117 bits (282), Expect = 2e-27
Identities = 84/259 (32%), Positives = 120/259 (46%), Gaps = 3/259 (1%)
Frame = +3
Query: 6 EYEKLYKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 185
+YEK Y+P++ +RA I+ G EP DDE D EEE QN
Sbjct: 122 KYEKKYQPIFSRRAEIIKGVSEPVDDEL------DHEEE----IFQNNL----------- 160
Query: 186 AIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLE 362
P+ KGIP+FW NV ++ EM+ DE +L+ L DI+ + D + LE
Sbjct: 161 -------PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLE 213
Query: 363 FYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS-CKGCEINW-NAGXXXXXXXX 536
F F N+YFTN +LTK Y K D+ SP G +Y +G +INW
Sbjct: 214 FEFDSNDYFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINWIKPEKNLTVRVE 267
Query: 537 XXXXXXXSRGSVRTVTKSVQADSFFNFFNPPTLPEDPNSTVASDVQALLTADFEIGHYIR 716
R V +V DSFFNFF+PP L +D + D LL D+++G +
Sbjct: 268 TKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFK 327
Query: 717 ERVVSRAVLLYTGEGLXDD 773
++++ A+ + EG D
Sbjct: 328 DQIIPLAIDCFLEEGDLSD 346
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 15 KLYKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAI 191
++Y+ L + R L ++GT E N+DE P D +E + + + E E ++ I
Sbjct: 265 EIYEVLKKNRILQIDGTIEDNEDE-KKPPVDTPSDEAINSDLDDPDSDEAPETEEGSDI 322
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 12 EKLYKPLYEKRALIVNGTYEPNDDECLNPW 101
E +Y+ Y +R+ + + +P+ CL+PW
Sbjct: 140 ECMYRNGYGRRSFRIEESVQPDTMSCLSPW 169
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 141 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 227
+N+ + E EEK D +AIE + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 558 SRGSVRTVTKSVQADSFFNFFNPPTLPEDPN 650
S ++R++TK VQ SF+ F P L P+
Sbjct: 42 SEEAIRSITKIVQDLSFYEFSGSPALLLHPD 72
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -3
Query: 215 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 63
Y G+ + + ++ ILLF ++ G++ L++P + SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,610
Number of Sequences: 5004
Number of extensions: 59490
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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