Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F15
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    27   4.7  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    26   8.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   8.2  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 640 EGSPPSRPRHGCTPRTFFHWSFLY 569
           E + PSRPR+    +TF++  +LY
Sbjct: 121 ESADPSRPRNAVDQKTFWYALYLY 144


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 823 GTDEAAPAGEGVGAFEISPTYGGHMRXFPVISVLSADNQFDFRCNRISPPIW 668
           G DE   A  G G+  +S  Y G      V+  L+ ++  +  C  +  P++
Sbjct: 236 GGDEVVKAKAGAGSATLSMAYAGARMASSVLRALAGESGVE-ECTFVESPLY 286


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 618 GREGGLPSASARPGYPVHIG-GEMRLHRKSN 707
           G  GGL S  A P YP HI  G   L  K N
Sbjct: 522 GSLGGLESTPAYPSYPSHIPLGTASLPLKGN 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,955
Number of Sequences: 5004
Number of extensions: 60377
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)