Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F11
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    29   0.62 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   5.8  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   7.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   7.7  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 384 PHKCGVTRVLNKISGSRTFYH 446
           P  C +    NKI+G RTFYH
Sbjct: 379 PQLCSLNLASNKITGCRTFYH 399


>SPCC417.08 |tef3||translation elongation factor
            eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 476  PRGYLRPLRLKREAPQSNEEGLQSIPFR-LRRAQRAEHHSL*RREGTRAGLGSHRQAKRK 652
            PRG L     K  A     E L+S  FR L R +  EH SL    G  A L SH + K  
Sbjct: 848  PRGELMETHAKMVAEVDRAEALKSGQFRPLVRKEIEEHCSL---LGLDAELVSHSRIKGL 904

Query: 653  AG 658
            +G
Sbjct: 905  SG 906


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 518 VLPA*DAADGDSLAVPVQTFNQYVVVERSTA 426
           VLP     +G  + +PVQ  N + +VE S+A
Sbjct: 588 VLPLYARYEGTEIPLPVQVLNHHNMVENSSA 618


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 592 VMKKGRHQSRSWEPSSSKTESRYRARSRSVQARRCPW 702
           V KK   ++ +  PSSSK +  Y+   R ++    PW
Sbjct: 230 VPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNTPW 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,681
Number of Sequences: 5004
Number of extensions: 71729
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)