Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F11
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866 32 0.50
04_04_1449 - 33683791-33683940,33684036-33684110,33684849-336849... 31 1.1
05_04_0035 + 17378541-17381276 31 1.5
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 30 2.7
03_03_0250 - 15845079-15845345,15846303-15846397,15846563-158466... 30 2.7
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 29 4.6
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 29 6.1
03_05_0083 - 20616432-20616469,20616666-20617119 29 6.1
>05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866
Length = 350
Score = 32.3 bits (70), Expect = 0.50
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 676 TEISPDTCFPFCLTMAPKTGSGAFPSS*RVMFSTLGSSKSKGNALESLFVRLWCFPLKTQ 497
+++SP +CF L+M+P T + FS + GN + LWCF L Q
Sbjct: 50 SQLSPGSCFEDILSMSPST----------IDFSRRFLNLIVGNRTPGV-KSLWCFDLMRQ 98
Query: 496 RTEIASRFPFRPSINMLW*NVRLPDILLSTRVTPHLCGSCR-SNMNV 359
+ + P + W R P ++ + P C + R S +NV
Sbjct: 99 QLFYPATPPPPHKVEEFWQKFRPPGTMMDSMGLPFSCFTFRASALNV 145
>04_04_1449 -
33683791-33683940,33684036-33684110,33684849-33684940,
33685020-33685106,33685460-33685615,33685706-33685804,
33686180-33686307,33687355-33687416
Length = 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +3
Query: 618 PVLGAIVKQNGKQVSGEISVSPGTPLSMEIFLNNESASVYGLLVNYMHVTD 770
PV G + QNGK G S SPG SME F SV G ++ V D
Sbjct: 14 PVSGGGLSQNGKFSYGYAS-SPGKRASMEDFYETRIDSVDGQIIGLFGVFD 63
>05_04_0035 + 17378541-17381276
Length = 911
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 491 RPLRLKREAPQSNEEGLQSI--PFRLRRAQRAEHHSL*RREGTRAGLGSHRQAKRKAGIG 664
RPL+ AP + G+ S+ P + +H + +GT G+GS R ++ GIG
Sbjct: 653 RPLQHGPSAPDPRQPGVVSMTQPPNVSTPNTWQHSGVHATQGTHHGMGSPRPWQQSVGIG 712
Query: 665 R 667
+
Sbjct: 713 Q 713
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 601 KGRHQSRSWEPSSSKTESRYRARSRSVQARRCPWR 705
+ R +SRSW S S++ S R+RSRS P R
Sbjct: 1250 RSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGPAR 1284
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 601 KGRHQSRSWEPSSSKTESRYRARSRS 678
+ R +SRSW S S++ S R+RSRS
Sbjct: 1240 RSRSRSRSWSRSRSRSRSWSRSRSRS 1265
>03_03_0250 -
15845079-15845345,15846303-15846397,15846563-15846671,
15846981-15847059,15847286-15847355,15847632-15847730,
15847906-15847930
Length = 247
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 7 SPTAPSTRTAAISRTPPTNVFLVSPFCFIL 96
+PT P TRTA +PP + L + F F +
Sbjct: 166 TPTLPYTRTAPPPHSPPATIALATSFTFFM 195
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 598 KKGRHQSRSWEPSSSKTESRYRARSRSV 681
++GR +SRS+ S S++ S R+RSRS+
Sbjct: 159 RRGRGRSRSYSRSRSRSRSYSRSRSRSL 186
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 601 KGRHQSRSWEPSSSKTESRYRARSRSVQARRCP 699
+GR SRS S S++ S R+RSRS R P
Sbjct: 195 RGRSHSRSISRSRSRSRSISRSRSRSYSRSRSP 227
>03_05_0083 - 20616432-20616469,20616666-20617119
Length = 163
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 608 GTRAGLGSHRQAKRKAGIGRDLGQSRHAVVHGDIPEQRVGQRLWP 742
G R + R K K G+GR G+ RH + P + ++ WP
Sbjct: 91 GRRGAVWGCRPGKGKRGVGRGSGEERHRL---GAPAEEGEEKRWP 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,479,598
Number of Sequences: 37544
Number of extensions: 526847
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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