Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F06
(849 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 420 e-116
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste... 387 e-106
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ... 300 2e-80
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R... 272 1e-71
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;... 226 5e-58
UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;... 222 8e-57
UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9; B... 221 2e-56
UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2... 219 5e-56
UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1; ... 216 5e-55
UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n... 216 7e-55
UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;... 211 1e-53
UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51... 210 4e-53
UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp... 206 5e-52
UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F; ... 206 5e-52
UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F; ... 205 9e-52
UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51... 203 4e-51
UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba... 202 1e-50
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 199 8e-50
UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F; ... 198 2e-49
UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding:... 196 8e-49
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 194 2e-48
UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 193 4e-48
UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep: ... 191 2e-47
UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n... 190 3e-47
UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2; V... 189 7e-47
UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 188 2e-46
UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 187 4e-46
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 185 1e-45
UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 184 3e-45
UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase do... 183 6e-45
UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase bet... 181 2e-44
UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;... 180 5e-44
UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7; D... 180 5e-44
UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep... 176 5e-43
UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F; ... 176 5e-43
UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, be... 175 9e-43
UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3; Dehalococcoide... 175 1e-42
UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase... 174 3e-42
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 173 4e-42
UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 ... 170 4e-41
UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium... 165 9e-40
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 163 7e-39
UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;... 163 7e-39
UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F; ... 162 1e-38
UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia ja... 162 1e-38
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 159 8e-38
UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=... 159 1e-37
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 159 1e-37
UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium c... 158 2e-37
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 154 2e-36
UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase bet... 154 3e-36
UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit... 151 2e-35
UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n... 149 1e-34
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 143 4e-33
UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n... 140 4e-32
UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 139 7e-32
UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone oxidore... 136 7e-31
UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2; Actinomycetale... 134 2e-30
UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia pick... 131 2e-29
UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1; Symbio... 123 5e-27
UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3; Proteobacteria... 114 2e-24
UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F... 113 5e-24
UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: Htx... 109 9e-23
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 100 9e-20
UniRef50_A3Q2V2 Cluster: Respiratory-chain NADH dehydrogenase do... 87 5e-16
UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2; ... 83 1e-14
UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase do... 62 2e-08
UniRef50_A5N6H2 Cluster: RnfC related NADH dehydrogenase; n=2; C... 59 1e-07
UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase do... 59 2e-07
UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3; Streptomy... 57 6e-07
UniRef50_Q73PG1 Cluster: Na(+)-translocating NADH-quinone reduct... 55 2e-06
UniRef50_A7G5W1 Cluster: NADH dehydrogenase family protein; n=4;... 55 3e-06
UniRef50_Q44SY7 Cluster: Electron transport complex, RnfABCDGE t... 54 5e-06
UniRef50_A0LLS5 Cluster: Electron transport complex, RnfABCDGE t... 54 6e-06
UniRef50_Q92CR5 Cluster: Lin1106 protein; n=13; Listeria|Rep: Li... 53 1e-05
UniRef50_Q21I18 Cluster: Electron transport complex, RnfABCDGE t... 53 1e-05
UniRef50_A1WT48 Cluster: Electron transport complex, RnfABCDGE t... 53 1e-05
UniRef50_Q2J9U3 Cluster: Respiratory-chain NADH dehydrogenase do... 52 2e-05
UniRef50_Q67R12 Cluster: Na+-transporting NADH-quinone reductase... 51 3e-05
UniRef50_Q0EPY6 Cluster: Electron transport complex, RnfABCDGE t... 51 3e-05
UniRef50_Q0AAG9 Cluster: Electron transport complex, RnfABCDGE t... 51 4e-05
UniRef50_A7BY78 Cluster: Electron transport complex protein rnfC... 50 7e-05
UniRef50_UPI0000E87BCA Cluster: predicted NADH:ubiquinone oxidor... 49 1e-04
UniRef50_Q896I5 Cluster: RnfC/nqrF; n=18; Clostridiales|Rep: Rnf... 49 1e-04
UniRef50_A6PV28 Cluster: Respiratory-chain NADH dehydrogenase do... 49 2e-04
UniRef50_A1I872 Cluster: Electron transport complex, RnfABCDGE t... 49 2e-04
UniRef50_A6TJY1 Cluster: Respiratory-chain NADH dehydrogenase do... 48 2e-04
UniRef50_Q9WY86 Cluster: Electron transport complex protein, put... 48 4e-04
UniRef50_A4CB98 Cluster: Electron transport complex protein RnfC... 48 4e-04
UniRef50_Q482U5 Cluster: Electron transport complex, RnfABCDGE t... 47 5e-04
UniRef50_A6NTM2 Cluster: Putative uncharacterized protein; n=1; ... 47 7e-04
UniRef50_Q0PIB6 Cluster: Ethanolamine utilization Fe-S center pr... 46 0.001
UniRef50_Q8AA47 Cluster: Na+-transporting NADH:ubiquinone oxidor... 46 0.001
UniRef50_Q2SKU6 Cluster: Predicted NADH:ubiquinone oxidoreductas... 46 0.002
UniRef50_Q1Q5X5 Cluster: Conserved hypothetical iron sulfur prot... 46 0.002
UniRef50_A1AVH8 Cluster: Electron transport complex, RnfABCDGE t... 46 0.002
UniRef50_Q8RIJ6 Cluster: Nitrogen fixation iron-sulphur protein ... 45 0.002
UniRef50_Q31GU4 Cluster: NADH oxidoreductase, RnfABCDGE type, C ... 45 0.002
UniRef50_Q18V42 Cluster: Respiratory-chain NADH dehydrogenase do... 45 0.002
UniRef50_Q0VP39 Cluster: Electron transport complex protein rnfC... 45 0.002
UniRef50_Q603B2 Cluster: Electron transport complex, C subunit; ... 45 0.003
UniRef50_A1WUZ0 Cluster: Electron transport complex, RnfABCDGE t... 44 0.004
UniRef50_Q9KT88 Cluster: Electron transport complex protein rnfC... 44 0.004
UniRef50_A6TUS7 Cluster: Respiratory-chain NADH dehydrogenase do... 44 0.005
UniRef50_Q52716 Cluster: Electron transport complex protein rnfC... 44 0.005
UniRef50_Q1FMT5 Cluster: Respiratory-chain NADH dehydrogenase do... 43 0.008
UniRef50_Q1ZEG2 Cluster: Electron transport complex protein RnfC... 43 0.011
UniRef50_A6FIW1 Cluster: Electron transport complex protein RnfC... 42 0.015
UniRef50_A4B3H4 Cluster: Electron transport complex protein RnfC... 42 0.015
UniRef50_Q1EUM7 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.020
UniRef50_Q02B56 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.020
UniRef50_A6NT39 Cluster: Putative uncharacterized protein; n=1; ... 42 0.020
UniRef50_A3DI53 Cluster: Electron transport complex, RnfABCDGE t... 42 0.020
UniRef50_A1U014 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.020
UniRef50_A5N7M5 Cluster: RnfC; n=1; Clostridium kluyveri DSM 555... 41 0.034
UniRef50_A5EVI2 Cluster: Electron transport complex protein, C s... 41 0.034
UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subuni... 41 0.034
UniRef50_A7B0F4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.045
UniRef50_Q9XDM9 Cluster: Propanediol utilization protein; n=15; ... 40 0.060
UniRef50_Q2BP71 Cluster: Electron transport complex protein RnfC... 40 0.060
UniRef50_Q9CNP2 Cluster: Electron transport complex protein rnfC... 40 0.079
UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=... 40 0.10
UniRef50_A7GJH3 Cluster: Respiratory-chain NADH dehydrogenase fa... 40 0.10
UniRef50_A1WTR7 Cluster: Electron transport complex, RnfABCDGE t... 40 0.10
UniRef50_A1SSX3 Cluster: Electron transport complex, RnfABCDGE t... 40 0.10
UniRef50_Q5P537 Cluster: Electron transport complex protein rnfC... 39 0.14
UniRef50_Q5NLH4 Cluster: NADH:ubiquinone oxidoreductase subunit;... 39 0.14
UniRef50_Q15RL3 Cluster: Electron transport complex, RnfABCDGE t... 39 0.18
UniRef50_A6PDB0 Cluster: Electron transport complex, RnfABCDGE t... 39 0.18
UniRef50_A6BIN7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.18
UniRef50_Q3A7W8 Cluster: Predicted NADH:ubiquinone oxidoreductas... 38 0.32
UniRef50_Q2NSZ7 Cluster: Putative iron-sulfur binding NADH dehyd... 38 0.32
UniRef50_Q1N6T4 Cluster: Electron transport complex protein RnfC... 38 0.32
UniRef50_Q9HYB8 Cluster: Electron transport complex protein rnfC... 38 0.42
UniRef50_Q89AW8 Cluster: Electron transport complex protein rnfC... 38 0.42
UniRef50_A7QGL6 Cluster: Chromosome chr12 scaffold_93, whole gen... 37 0.56
UniRef50_Q5FP48 Cluster: Outer membrane protein; n=2; Gluconobac... 36 0.97
UniRef50_Q1AWR7 Cluster: Respiratory-chain NADH dehydrogenase do... 36 0.97
UniRef50_A0L5G6 Cluster: Electron transport complex, RnfABCDGE t... 36 0.97
UniRef50_Q30W86 Cluster: Electron transfer protein; n=1; Desulfo... 36 1.7
UniRef50_Q3YL96 Cluster: CdiA; n=3; Escherichia coli|Rep: CdiA -... 35 2.2
UniRef50_A4RAI3 Cluster: Putative uncharacterized protein; n=1; ... 35 3.0
UniRef50_Q0HIH8 Cluster: Electron transport complex, RnfABCDGE t... 34 3.9
UniRef50_Q0F0I1 Cluster: Electron transport complex protein RnfC... 34 3.9
UniRef50_A6VVJ2 Cluster: Electron transport complex, RnfABCDGE t... 34 3.9
UniRef50_A1HJR3 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_P57215 Cluster: Electron transport complex protein rnfC... 34 3.9
UniRef50_Q82NN9 Cluster: Putative uncharacterized protein; n=1; ... 34 5.2
UniRef50_A6M0M4 Cluster: Respiratory-chain NADH dehydrogenase do... 34 5.2
UniRef50_A0JX02 Cluster: Peptidase S9, prolyl oligopeptidase act... 34 5.2
UniRef50_Q6LTT0 Cluster: Hypothetical type I restriction-modific... 33 6.9
UniRef50_A0E8Q4 Cluster: Chromosome undetermined scaffold_83, wh... 33 6.9
UniRef50_Q9VEK2 Cluster: CG5866-PA; n=1; Drosophila melanogaster... 33 9.1
UniRef50_A4RDW7 Cluster: Putative uncharacterized protein; n=1; ... 33 9.1
>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor; n=215; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor - Homo sapiens
(Human)
Length = 464
Score = 420 bits (1034), Expect = e-116
Identities = 188/221 (85%), Positives = 204/221 (92%), Gaps = 1/221 (0%)
Frame = +2
Query: 146 VPVRFQ-QTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW 322
V VRF T AP K +G L D DR+FTNLYGRH+WRLKG+L+RGDWY TKEILLKG DW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDW 75
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ E+KTSGLRGRGGAGFPTG+KWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDP 135
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
HKL+EGCL+ GRAMGA+AAYIYIRGEFYNEASNLQVAI EAY+AGLIGKN+CGSGYDFD+
Sbjct: 136 HKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
FV RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG+F
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVF 236
>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
melanogaster|Rep: CG11423-PA - Drosophila melanogaster
(Fruit fly)
Length = 702
Score = 387 bits (952), Expect = e-106
Identities = 167/209 (79%), Positives = 190/209 (90%)
Frame = +2
Query: 179 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRG 358
+K +GPLAD+DR+FTNLYGRH+WRLK A+ RGDWY TKEI+ KG WIVNE+KTSGLRG
Sbjct: 251 TKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRG 310
Query: 359 RGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 538
RGGAGFP+G+KWSFM+KP DGRPK+LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR
Sbjct: 311 RGGAGFPSGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 370
Query: 539 AMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICG 718
AMGA +IYIRGEFYNEA NLQ AI EAY+AG +GKN+CGSG+DFD++V RGAGAYICG
Sbjct: 371 AMGANTGFIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICG 430
Query: 719 EETALIESIEGKQGKPRLKPPFPADVGLF 805
EET+LIES+EGK GKPR KPPFPAD+G+F
Sbjct: 431 EETSLIESLEGKAGKPRNKPPFPADIGVF 459
>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F - Rickettsia felis (Rickettsia azadi)
Length = 422
Score = 300 bits (737), Expect = 2e-80
Identities = 136/202 (67%), Positives = 166/202 (82%)
Frame = +2
Query: 200 LADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFP 379
L + D++FTNL+G+ LK + RGDW TK +L KG ++I+ E+K SGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGFS 61
Query: 380 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 559
TGMKWSFM K S +P YLVVNADE EPGTCKDR+I+R +PHKL+EGCL+A A+GA
Sbjct: 62 TGMKWSFMPKNS-AKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANDC 120
Query: 560 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIE 739
YIYIRGEFYNEASN+Q A+ EAY+ GLIGKN+CGSG+D +I++HRGAGAYICGEETAL+E
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 740 SIEGKQGKPRLKPPFPADVGLF 805
S+EGK+G PRLKPPFPA GL+
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLY 202
>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
CG8102-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 481
Score = 272 bits (666), Expect = 1e-71
Identities = 122/215 (56%), Positives = 154/215 (71%), Gaps = 1/215 (0%)
Frame = +2
Query: 182 KDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGR 361
K K+GPL D DRVF NLYGRH+WRL GA RGDW+ T E+L +G +WI+ ++ SGLRGR
Sbjct: 52 KTKFGPLDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGR 111
Query: 362 GGAGFPTGMKWSFMNKP-SDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 538
GGAGF G+KW F+ + S+ PK ++VN EGEPGTCKDR+I+RH+PHKL+EG L+ G
Sbjct: 112 GGAGFYAGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGV 171
Query: 539 AMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICG 718
AMG A +YIR FYNEA NL A+AEAY GL+G + CG+G FD+ V RG Y+CG
Sbjct: 172 AMGCGRAIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCG 230
Query: 719 EETALIESIEGKQGKPRLKPPFPADVGLFXLSHHC 823
EETA+I + GK G+PR +PPF + G F H C
Sbjct: 231 EETAMINCLMGKLGRPRRRPPFLTEKGYF--EHPC 263
>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 439
Score = 226 bits (553), Expect = 5e-58
Identities = 107/200 (53%), Positives = 143/200 (71%)
Frame = +2
Query: 206 DSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTG 385
D +V ++ +G+ + L + ++ L D I+NE+K S LRGRGGAGFPTG
Sbjct: 9 DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68
Query: 386 MKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI 565
+KWSF+ K S +PKY++ N DE EPGTCKDR I HDPH ++EG +IAG A+GA++AYI
Sbjct: 69 LKWSFVPKES-AKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127
Query: 566 YIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESI 745
Y+RGE+ + +Q AIA+AY G IGKN GSG DFD++ H GAGAY GEE+AL+ES+
Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGEESALMESL 187
Query: 746 EGKQGKPRLKPPFPADVGLF 805
EGK+G PR++PPFPA VGL+
Sbjct: 188 EGKRGIPRIRPPFPAVVGLW 207
>UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;
n=1; Deinococcus geothermalis DSM 11300|Rep:
NADH-quinone oxidoreductase, F subunit - Deinococcus
geothermalis (strain DSM 11300)
Length = 446
Score = 222 bits (543), Expect = 8e-57
Identities = 104/188 (55%), Positives = 130/188 (69%)
Frame = +2
Query: 248 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP 427
W L L G + + D ++ E+K SGLRGRGGAGF TG+KWSFM +DG+
Sbjct: 33 WTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFATGLKWSFMPL-NDGKQ 91
Query: 428 KYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 607
Y++ NADE EPG+ KDR ++ DPH+L+EG LI G AM A YIYIRGE+ + A +
Sbjct: 92 HYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVGYIYIRGEYVHAAGRVW 151
Query: 608 VAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFP 787
AI EA AGL+GKN GSG+DFD+ VHRGAGAYICGEETAL+ S+EG + PRLKPPFP
Sbjct: 152 AAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEETALMNSLEGLRANPRLKPPFP 211
Query: 788 ADVGLFXL 811
A GL+ +
Sbjct: 212 AAAGLYGM 219
>UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9;
Bacteria|Rep: NADH dehydrogenase I, F subunit -
Leptospira interrogans
Length = 443
Score = 221 bits (540), Expect = 2e-56
Identities = 100/171 (58%), Positives = 129/171 (75%)
Frame = +2
Query: 293 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 472
K+ L D I+ E+K SGLRGRGGAGFPTG+KWSF+ K +PKY++ NADEGEPGT
Sbjct: 32 KKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGEPGTF 90
Query: 473 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 652
KDR+++ + PH+++EG +I RA+G+ + YIRGEF A +Q AI EAY G +GKN
Sbjct: 91 KDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKN 150
Query: 653 SCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GSG+DFD+ ++ GAGAYICGEETALI S+EG++G PRLKPPFPA GL+
Sbjct: 151 ILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLY 201
>UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2;
n=100; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 421
Score = 219 bits (536), Expect = 5e-56
Identities = 99/163 (60%), Positives = 126/163 (77%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 496
D IV +K S LRGRGGAGFPTGMKWSF+ K + G+PKYL NADEGEPGT KDR IM
Sbjct: 40 DEIVELVKESNLRGRGGAGFPTGMKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMER 98
Query: 497 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 676
DPH+L+EG ++ A+GA+ AY+YIRGE+ ++ AIAEA++ G +G GSG++F
Sbjct: 99 DPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNF 158
Query: 677 DIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ +HRGAGAYICGEETA++ES+EGK+ +PRLKPPFPA GL+
Sbjct: 159 MVHIHRGAGAYICGEETAMLESLEGKRAQPRLKPPFPAVAGLY 201
>UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1;
n=6; Bacteria|Rep: NADH-quinone oxidoreductase subunit 1
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 438
Score = 216 bits (528), Expect = 5e-55
Identities = 103/187 (55%), Positives = 129/187 (68%), Gaps = 1/187 (0%)
Frame = +2
Query: 248 WRLKGALARGDWYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR 424
W L L G + K +L + T D ++ E+K SGLRGRGGAGFPTG+KWSFM K DG+
Sbjct: 27 WTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGK 85
Query: 425 PKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNL 604
YL+ NADE EPG+ KDR I+ PH L+EG ++AG A+ A YIY+RGE+ A L
Sbjct: 86 QHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRL 145
Query: 605 QVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPF 784
+ AI EA G +GKN G+ + FD+ VHRGAGAYICGEETAL+ S+EG + PRLKPPF
Sbjct: 146 EQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPF 205
Query: 785 PADVGLF 805
PA GL+
Sbjct: 206 PAQSGLW 212
>UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n=9;
Bacteria|Rep: NADP-reducing hydrogenase, subunit C -
Thermotoga maritima
Length = 545
Score = 216 bits (527), Expect = 7e-55
Identities = 101/185 (54%), Positives = 132/185 (71%)
Frame = +2
Query: 251 RLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPK 430
R++ +AR ++ + L I+ E+K SGLRGRGGAGFPTG+KW F K S + K
Sbjct: 124 RIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFPTGLKWEFTYKASADQ-K 182
Query: 431 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQV 610
Y++ NADEGEPGT KDR IM DPH L+EG +IAG A+GA YIYIRGE+++ L+
Sbjct: 183 YVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRGEYHSSIEILKK 242
Query: 611 AIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPA 790
A+ +AY+ G +G+N GSG++FD+ + GAGAY+ GEETALIESIEGK +PRLKPP+P
Sbjct: 243 AVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKPARPRLKPPYPP 302
Query: 791 DVGLF 805
GLF
Sbjct: 303 TFGLF 307
>UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Roseiflexus sp. RS-1
Length = 449
Score = 211 bits (516), Expect = 1e-53
Identities = 97/161 (60%), Positives = 121/161 (75%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
IV +K SGLRGRGGAGFPTG+KW F+ P P+YL+ N DE EPGT + +I+ +P
Sbjct: 61 IVQTVKDSGLRGRGGAGFPTGVKWGFL--PKGVYPRYLLCNCDESEPGTFNNHQIIDRNP 118
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
H+L+EG I+ A+ A AYIYIRGEF A L+ AIA+AY+ G +G+N G GYD DI
Sbjct: 119 HQLIEGIAISAYAIEAHTAYIYIRGEFAAAARRLERAIAQAYERGFLGRNIFGKGYDLDI 178
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+VHRGAGAYICGEETAL+ES+EGK G+PRL+PPFPA GL+
Sbjct: 179 YVHRGAGAYICGEETALMESLEGKIGQPRLRPPFPAVAGLY 219
>UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family; n=2; Sphingobacteriales genera incertae
sedis|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family - Salinibacter ruber (strain DSM 13855)
Length = 464
Score = 210 bits (512), Expect = 4e-53
Identities = 91/161 (56%), Positives = 125/161 (77%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+ +E+K SGL GRGGAGFPTG+KW+FM +P D RP+++ VNADE EPGT KDR++M ++P
Sbjct: 68 VTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVNADESEPGTFKDRQVMEYNP 126
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
H ++EG L+AG A+ AY+YIRGE+ + +L+ + AY+AG +G+N GS + DI
Sbjct: 127 HLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENAYEAGYVGENIMGSDFTMDI 186
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+H+GAGAYICGEET+L+ES+EGK+G PR KPPFPA G+F
Sbjct: 187 VLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQSGIF 227
>UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp.
PE36|Rep: NuoF2 NADH I CHAIN F - Moritella sp. PE36
Length = 425
Score = 206 bits (503), Expect = 5e-52
Identities = 96/173 (55%), Positives = 125/173 (72%)
Frame = +2
Query: 287 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 466
L K + D +++ +K S LRGRGGAGFPTG+KWSF+ K DG+ YL NADEGEPG
Sbjct: 30 LKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPK-DDGKIHYLCCNADEGEPG 88
Query: 467 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 646
T KDR +M DPH+++EG +IA A+ A+ AYIYIRGE+ + AI AY G +G
Sbjct: 89 TFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSIDMITQAIKAAYAKGYLG 148
Query: 647 KNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
KN + + +I+VH+GAGAYICGEETAL+ESIEG++G+P+LKPPFPA GL+
Sbjct: 149 KNIFNTDFCLNIYVHKGAGAYICGEETALLESIEGRRGQPKLKPPFPAVSGLY 201
>UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F;
n=32; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Streptomyces coelicolor
Length = 449
Score = 206 bits (503), Expect = 5e-52
Identities = 95/171 (55%), Positives = 124/171 (72%)
Frame = +2
Query: 293 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 472
++ L D ++ +K SGLRGRGGAGFPTGMKW F+ + DG+P YLVVNADE EPGTC
Sbjct: 46 RKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTC 104
Query: 473 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 652
KD ++ +PH L+EG +IA A+ + A+IY+RGE L A+ EAY AG +G+N
Sbjct: 105 KDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGEN 164
Query: 653 SCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GSG D + VH GAGAYICGEETAL++S+EG++G+PRL+PPFPA GL+
Sbjct: 165 ILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLY 215
>UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Pseudomonas aeruginosa
Length = 448
Score = 205 bits (501), Expect = 9e-52
Identities = 98/171 (57%), Positives = 120/171 (70%)
Frame = +2
Query: 293 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 472
K + D IV +K SGL+GRGGAGFPTG+KW M K +YL+ NADE EP T
Sbjct: 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTW 107
Query: 473 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 652
KDR +M PH LVEG LI+ RA+ A YI++RGE+ + A NL AI EA AGL+GKN
Sbjct: 108 KDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKN 167
Query: 653 SCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GSG+DF++FVH GAG YICGEETALI S+EG++ PR KPPFPA VG++
Sbjct: 168 ILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVW 218
>UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein; n=1; Trichomonas vaginalis
G3|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein - Trichomonas vaginalis G3
Length = 425
Score = 203 bits (496), Expect = 4e-51
Identities = 96/198 (48%), Positives = 133/198 (67%)
Frame = +2
Query: 212 DRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMK 391
DR+FTN+ G E L+ + RGDW T++I+ G +I++E++ S LRGR GAG T K
Sbjct: 15 DRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGLLTYKK 74
Query: 392 WSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYI 571
W + S P YL +N +E EPGTCKDR+I++++P K++EG +A A+ Y+Y+
Sbjct: 75 WEEI-LTSKQLPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHRCYVYV 133
Query: 572 RGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEG 751
RG + EA LQ+AI EA +A LIGKN+ G+DF+I VH GAGAY+CGE+T L+ S+EG
Sbjct: 134 RGHYTKEAKRLQLAIDEAKKANLIGKNN-KFGWDFEINVHPGAGAYVCGEQTGLMTSLEG 192
Query: 752 KQGKPRLKPPFPADVGLF 805
G PR KPP P + GLF
Sbjct: 193 NPGTPRQKPPQPFEKGLF 210
>UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae
bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
bacterium TAV2
Length = 478
Score = 202 bits (492), Expect = 1e-50
Identities = 97/181 (53%), Positives = 128/181 (70%), Gaps = 1/181 (0%)
Frame = +2
Query: 266 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 445
L G + + K + + + + +E+K SG+RGRGGAGFP G+KW +++ S G+P YL+VN
Sbjct: 41 LRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFPCGVKWGLVDRKS-GKPIYLIVN 99
Query: 446 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
ADE EPGT KDR I+ DPH+L+EG +I+ A + AYIYIRGE A L+ AIAEA
Sbjct: 100 ADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQAYIYIRGEMPEGARILERAIAEA 159
Query: 626 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPP-FPADVGL 802
+G N G+GY +I+VHRGAGAYICGEET LIES+EGK+ PR+KPP FPA +GL
Sbjct: 160 RAKNFVGPNILGTGYSCEIYVHRGAGAYICGEETGLIESLEGKRANPRIKPPYFPAVLGL 219
Query: 803 F 805
+
Sbjct: 220 Y 220
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 199 bits (485), Expect = 8e-50
Identities = 97/161 (60%), Positives = 120/161 (74%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ E+K + LRGRGGAGFP G+KW F+ K +D +P YL+ NADEGEPGT KDR+IM +DP
Sbjct: 211 ILEEVKKANLRGRGGAGFPAGVKWGFIPKDTD-KPVYLICNADEGEPGTYKDRQIMEYDP 269
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
H L+EG IA RA+GA+ A+IYIRGEF A L+ AI EA G + + DI
Sbjct: 270 HLLIEGMAIAARAIGARQAFIYIRGEFAWIADILEKAIGEAKADGQLS--------ELDI 321
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
VHRGAGAY+CGEETALIESIEGK+G+PR++PPFPA GL+
Sbjct: 322 IVHRGAGAYVCGEETALIESIEGKRGQPRIRPPFPAVEGLY 362
>UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit F - Aquifex aeolicus
Length = 426
Score = 198 bits (482), Expect = 2e-49
Identities = 98/181 (54%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Frame = +2
Query: 266 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSF-MNKPSDGRPKYLVV 442
L G + ++ L + I++ + S LRGRGGAGFPTG KW F + P P+Y +
Sbjct: 35 LKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPG---PRYFIC 91
Query: 443 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
NADE EPGT KDR I+ DPH L+EG +I+ A+GA AYIYIRGE+ L+ AI E
Sbjct: 92 NADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEE 151
Query: 623 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
A + G +GKN GSG+D +I+V RGAGAYICGEETALIES+EGK+G PRLKPP+P GL
Sbjct: 152 AKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGL 211
Query: 803 F 805
+
Sbjct: 212 W 212
>UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur
binding:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=4; Bacteria|Rep: 4Fe-4S ferredoxin,
iron-sulfur binding:Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Halothermothrix orenii H 168
Length = 632
Score = 196 bits (477), Expect = 8e-49
Identities = 100/215 (46%), Positives = 136/215 (63%), Gaps = 3/215 (1%)
Frame = +2
Query: 170 QAPSKDKYGPL-ADSDRVFTNLYGRHEWR-LKGALARGDWY-LTKEILLKGTDWIVNEMK 340
+A S +K P A+ +R+ + G + L LA G + L+K +L + + E+
Sbjct: 136 EAYSNEKEIPFYANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVT 195
Query: 341 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 520
SGLRGRGG GFPTG KW F + + KY++VN DEG+PG DR IM DPH+++EG
Sbjct: 196 ESGLRGRGGGGFPTGKKWEFAYREKADQ-KYVIVNGDEGDPGAFMDRSIMEGDPHRVIEG 254
Query: 521 CLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGA 700
IAG A GA YIY+R E+ L+ AI +AY GL+G++ GSG+DFD+ + GA
Sbjct: 255 ITIAGYATGATKGYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGA 314
Query: 701 GAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GA++CGEETAL+ SIEGK+G P KPPFPA GL+
Sbjct: 315 GAFVCGEETALMASIEGKRGMPNPKPPFPAQSGLW 349
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 194 bits (474), Expect = 2e-48
Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Frame = +2
Query: 266 LARGDWYLTKEILLK-GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 442
L +G + K+ L + D ++ +K SGLRGRGGAGFP G+KWSF+ P KY++
Sbjct: 229 LEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGVKWSFL--PKGDMQKYVIC 286
Query: 443 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
NADEGEPGT KDR +M +PH L+EG ++ G A GA YIYIRGE+ LQ AI +
Sbjct: 287 NADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIYIRGEYRRSIERLQRAIDQ 346
Query: 623 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
A + G++G N GS + FDIF+ G GAY+CGEE++L+ S+EGK+G PR +PPFPA G
Sbjct: 347 AREKGILGDNIFGSSFRFDIFIKEGGGAYVCGEESSLMNSMEGKRGYPRFRPPFPAGAG 405
>UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=11; Bacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Thermoanaerobacter tengcongensis
Length = 596
Score = 193 bits (471), Expect = 4e-48
Identities = 90/185 (48%), Positives = 128/185 (69%), Gaps = 1/185 (0%)
Frame = +2
Query: 254 LKGALARGDWYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPK 430
++ A+A + ++L + T + ++ E+K SGLRGRGG GFPTG+KW F K + PK
Sbjct: 130 IREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWEFAYKQKE-TPK 188
Query: 431 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQV 610
Y+V NADEG+PG DR I+ DPH ++E IAG A+GA YIY+R E+ L++
Sbjct: 189 YVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKI 248
Query: 611 AIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPA 790
AI +A + GL+GK+ G+G+DFDI + GAGA++CGEETAL+ SI GK+G+PR +PPFPA
Sbjct: 249 AIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSIMGKRGEPRPRPPFPA 308
Query: 791 DVGLF 805
G++
Sbjct: 309 VKGVW 313
>UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep:
NADH dehydrogenase - Geobacter bemidjiensis Bem
Length = 593
Score = 191 bits (466), Expect = 2e-47
Identities = 86/161 (53%), Positives = 115/161 (71%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++E+K SGLRGRGG GFPTGMKWSF S G KYL+ NADEG+PG DR I+ DP
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFC-AASPGNHKYLICNADEGDPGAFMDRSILEGDP 211
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
+ ++EG +IA A+G A Y+Y+R E+ LQ A+ Y+ G +GKN G G+DFD+
Sbjct: 212 YCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDM 271
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ +GAGA++CGEETAL+ SIEG++G PR +PPFPA GL+
Sbjct: 272 RIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLW 312
>UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n=4;
cellular organisms|Rep: NADP-reducing hydrogenase,
subunit C - Methanobacterium thermoautotrophicum
Length = 630
Score = 190 bits (464), Expect = 3e-47
Identities = 92/180 (51%), Positives = 120/180 (66%)
Frame = +2
Query: 266 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 445
LA G + L D ++ E+K SGLRGRGGAGFPT +KWS + + KYL+ N
Sbjct: 152 LATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAGFPTWLKWSLCRQEAS-EVKYLICN 210
Query: 446 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
ADEG+PG +R ++ DPH L+EG LIA A+GA+ AYIY R E+ L+VAI++
Sbjct: 211 ADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAREAYIYCRAEYPLALERLRVAISDL 270
Query: 626 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GL+GK+ GSG+D DI + GAGA++CGEETALI SIEGK+G PR +PPFP GL+
Sbjct: 271 RNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEETALISSIEGKRGMPRTRPPFPTTRGLW 330
>UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, F subunit -
Photobacterium sp. SKA34
Length = 427
Score = 189 bits (461), Expect = 7e-47
Identities = 86/177 (48%), Positives = 120/177 (67%)
Frame = +2
Query: 275 GDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 454
G + I+ + + ++ E+K SGLRG GG GFPTG+KW F+ K + P YLVVN DE
Sbjct: 24 GGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLAKDAS-HPVYLVVNLDE 82
Query: 455 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 634
EPG+ KDR+++ DPH ++EG + + +GA A+++IRGE+ A L+ A+ EA A
Sbjct: 83 SEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYREGAKGLEKAVQEARAA 142
Query: 635 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GL+G+N GSG+D D+ VH AG YICGEETAL+ ++EG +G PR KPPFP GL+
Sbjct: 143 GLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGNPRSKPPFPIVKGLW 199
>UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 427
Score = 188 bits (457), Expect = 2e-46
Identities = 100/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%)
Frame = +2
Query: 209 SDRVFTNL-YGRHEWRLKGALARGDWYLTKEIL--LKGTDWIVNEMKTSGLRGRGGAGFP 379
S+R+F N LK RG + + L L+ D + E+ SGLRGRGGAGFP
Sbjct: 3 SERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPID-VEKEVMASGLRGRGGAGFP 61
Query: 380 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 559
TG KWSF+NK + YL NADEGEPGT KDR I H+ H+L+EG ++A A+ + A
Sbjct: 62 TGSKWSFVNKKAP--VVYLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNA 119
Query: 560 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIE 739
+IYIRGEF L A++EAY+AG +G+N GS + DI V +G GAY+CGEE++L
Sbjct: 120 FIYIRGEFDLSFRRLMDAMSEAYKAGYLGENILGSSFSCDIRVMQGGGAYVCGEESSLYT 179
Query: 740 SIEGKQGKPRLKPPFPADVGLF 805
SIEG +G PR KPPFPA GL+
Sbjct: 180 SIEGFKGYPRNKPPFPAVQGLY 201
>UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=1; Pelobacter
carbinolicus DSM 2380|Rep: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 571
Score = 187 bits (455), Expect = 4e-46
Identities = 86/171 (50%), Positives = 113/171 (66%)
Frame = +2
Query: 293 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 472
K + ++ ++NE SGLRGRGGAGFP G+KW F + KY++ NADEG+PG
Sbjct: 183 KALTEMSSEEVINEAIGSGLRGRGGAGFPIGLKWKFAAAEKNDI-KYILCNADEGDPGAF 241
Query: 473 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 652
DR +M DPH ++EG +I +A+GA YIY R E+ L AI +A L+G+N
Sbjct: 242 MDRNVMESDPHSIIEGLIIGAKAIGAHQGYIYCRAEYPLAIETLNKAINQARALDLLGEN 301
Query: 653 SCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
G+G+ FDI V+ GAGA++CGEETAL+ SIEGK+G PR KPPFPA GLF
Sbjct: 302 ILGTGFSFDISVYEGAGAFVCGEETALMRSIEGKRGNPRPKPPFPAKAGLF 352
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 185 bits (451), Expect = 1e-45
Identities = 91/179 (50%), Positives = 111/179 (62%)
Frame = +2
Query: 269 ARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNA 448
A G + + G ++ E+ +GL GRGGA FPTG KW D P YLV NA
Sbjct: 263 AHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQATAAQPD-HPHYLVCNA 321
Query: 449 DEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAY 628
DE EPGT KDR +M DP+ LVE IA A GA Y+Y+RGE+ + L AI +A
Sbjct: 322 DESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQAR 381
Query: 629 QAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
GL+G + G GY FDI + RGAGAYICGEETAL SIEG++G+PR KPPFP + GLF
Sbjct: 382 TRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPVEKGLF 440
>UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding subunit; n=3; cellular organisms|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding subunit -
Syntrophus aciditrophicus (strain SB)
Length = 637
Score = 184 bits (448), Expect = 3e-45
Identities = 86/181 (47%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Frame = +2
Query: 266 LARGDWY-LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 442
+ARG + L K + + ++ E+KTSGLRGRGG GFPTG KW + ++G KY++
Sbjct: 175 IARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGGGFPTGTKWESCRR-AEGEIKYVIC 233
Query: 443 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
N DEG+PG DR +M DPH ++EG +I A+GA YIY+R E+ +NLQ AI +
Sbjct: 234 NGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGAHEGYIYVRNEYPLAVANLQHAIGQ 293
Query: 623 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
A +AGL+GKN G+G++FDI + +GAGA++CGE TAL+ S+EGK G+PR K + GL
Sbjct: 294 AREAGLLGKNILGTGFEFDIKIAKGAGAFVCGESTALMASLEGKAGEPRAKYIHTVEQGL 353
Query: 803 F 805
+
Sbjct: 354 W 354
>UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Bacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Halothermothrix orenii H 168
Length = 408
Score = 183 bits (445), Expect = 6e-45
Identities = 84/161 (52%), Positives = 110/161 (68%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ E+K SGLRGRGGAGFPTG+KW K G KY++ N DEGEPGT KDR ++ + P
Sbjct: 34 IIEELKKSGLRGRGGAGFPTGLKWELALKEKAGE-KYIICNGDEGEPGTFKDRYLLENSP 92
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
K++EG LI +GA YIYIRGE+ + + I EA + G++G GS Y FD+
Sbjct: 93 LKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILGNRVMGSDYSFDL 152
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ +GAGAY+CG+ET+LI SIEGK+G R+KPP+P GLF
Sbjct: 153 KLIKGAGAYVCGDETSLINSIEGKRGTSRIKPPYPTRQGLF 193
>UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=107; Bacteria|Rep: NAD-dependent formate
dehydrogenase beta subunit - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 526
Score = 181 bits (441), Expect = 2e-44
Identities = 90/170 (52%), Positives = 114/170 (67%)
Frame = +2
Query: 302 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 481
L + IV+E+ SGLRGRGGA FPTG+KW + R KY+V NADEG+ GT DR
Sbjct: 140 LAMSAEQIVDEVSASGLRGRGGAAFPTGIKWKTVLTTPAPR-KYIVCNADEGDSGTFADR 198
Query: 482 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG 661
+M DP+ L+EG IAG A+GA YIY+R E+ + + L+ AIA A + G +G + G
Sbjct: 199 LLMEGDPYSLIEGMTIAGLAVGATYGYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHG 258
Query: 662 SGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLFXL 811
SG FD+ V GAGAYICGEET+L+ES+EGK+G R KPP PA GLF L
Sbjct: 259 SGQRFDLEVREGAGAYICGEETSLLESLEGKRGVVRAKPPLPAIAGLFGL 308
>UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=91; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase subunit - Bacteroides thetaiotaomicron
Length = 635
Score = 180 bits (437), Expect = 5e-44
Identities = 86/179 (48%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Frame = +2
Query: 266 LARGDWYLTKEILL-KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 442
+AR ++ + LL K +++ +K SGLRGRGG GFPTG+KW F +K KY+V
Sbjct: 173 IAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGGGFPTGLKWEFASKQVSN-VKYVVC 231
Query: 443 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
NADEG+PG DR IM DPH +VE I G ++G+ +YIR E+ + L+ AI +
Sbjct: 232 NADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAINRLKKAIEQ 291
Query: 623 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
A + GL+G + G+ + FDI + GAGA++CGEETALI S+EGK+G+P LKPPFPA+ G
Sbjct: 292 AREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESG 350
>UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7;
Deltaproteobacteria|Rep: NADH dehydrogenase I, F subunit
- Geobacter sulfurreducens
Length = 423
Score = 180 bits (437), Expect = 5e-44
Identities = 84/154 (54%), Positives = 110/154 (71%)
Frame = +2
Query: 344 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 523
+ LRGRGGAGFPTG KWSF+ + G P+YL+ N DE EPGT KDR ++ +P+ LVEG
Sbjct: 48 ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106
Query: 524 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAG 703
+A A+G A+I+IR + A N + AIAEA +AGL+GKN GSG+ D+ VH+ AG
Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166
Query: 704 AYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
YICGEETAL+ ++EG++ PR KPPFPA GL+
Sbjct: 167 RYICGEETALMNALEGRRANPRSKPPFPAVKGLW 200
>UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 533
Score = 176 bits (429), Expect = 5e-43
Identities = 81/161 (50%), Positives = 110/161 (68%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ EM SGLRGRGG G+PTG+KW+ + K G+ KY++ NADEG+PG DR ++ DP
Sbjct: 160 VIVEMNKSGLRGRGGGGYPTGLKWATVAK-MPGQQKYVICNADEGDPGAFMDRSVLESDP 218
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
H+++EG IA A+GA YIY+R E+ LQ AI +A + GL+G S DF I
Sbjct: 219 HRILEGMAIAAYAVGANHGYIYVRAEYPLAIQRLQKAIQQAKRYGLMGTQIFDSPIDFKI 278
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ GAGA++CGEETALI S+EGK+G PR +PP+PA GL+
Sbjct: 279 DIRVGAGAFVCGEETALIASVEGKRGTPRPRPPYPAQSGLW 319
>UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F;
n=1; Plesiocystis pacifica SIR-1|Rep: Putative NADH
dehydrogenase I chain F - Plesiocystis pacifica SIR-1
Length = 503
Score = 176 bits (429), Expect = 5e-43
Identities = 89/167 (53%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Frame = +2
Query: 308 KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 487
+G DWI+ ++KTSGL+GRGGAGFP +KW + ++ +Y+VVNADEGEPGT KDREI
Sbjct: 143 EGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAVRTQAE-LTRYVVVNADEGEPGTFKDREI 201
Query: 488 MRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSG 667
M PH+++EG IA GA A+IY+RGEF + L+ AIAEA G
Sbjct: 202 MLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAEA-----------GER 250
Query: 668 YDF-DIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
D+ DI + G GAYICGEETAL+E+IEGK+G PRLKPP+P + GL+
Sbjct: 251 LDWLDIEIVEGHGAYICGEETALLEAIEGKRGMPRLKPPYPTEKGLW 297
>UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, beta
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, beta subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 417
Score = 175 bits (427), Expect = 9e-43
Identities = 83/162 (51%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+NE+ + LRGRGGA +P G KW + + G KY+V NADEGEPGT KD+ ++ DP
Sbjct: 30 ILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGEPGTFKDKVLLSEDP 88
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDFD 679
++EG +IAG A+A YIY+RGE+ Q A+ A QAG +G+N G G+++D
Sbjct: 89 LSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYD 148
Query: 680 IFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
I + GAGAYICGE +AL+ SIEGK G+PR+KPP ADVGL+
Sbjct: 149 ITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLY 190
>UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3;
Dehalococcoides|Rep: NADH dehydrogenase -
Dehalococcoides sp. BAV1
Length = 417
Score = 175 bits (426), Expect = 1e-42
Identities = 84/179 (46%), Positives = 113/179 (63%)
Frame = +2
Query: 266 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 445
LA G + K+ L + ++ E+K S L GRGGA FPTG+KW K PKY+V N
Sbjct: 23 LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEK-ANPKYIVCN 81
Query: 446 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
A EGEPGT KDR I+++DPH ++EG +IA A+G +I+ R + E Q AI +A
Sbjct: 82 ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTQEIELFQKAIDQA 141
Query: 626 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
+ G +G+N GS + DI ++ AGAYICGEETAL ES+EG +G P +PP+P VGL
Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPATRPPYPVQVGL 200
>UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase
chain F; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Probable NADH-ubiquinone oxidoreductase chain
F - Protochlamydia amoebophila (strain UWE25)
Length = 432
Score = 174 bits (423), Expect = 3e-42
Identities = 87/173 (50%), Positives = 113/173 (65%)
Frame = +2
Query: 287 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 466
L K I +D ++ +K S LRGRGG GF TG+KWSF+ K KYLV N DE EPG
Sbjct: 31 LKKAISSISSDQLIEMVKQSWLRGRGGGGFQTGLKWSFVPKDCQ-ISKYLVCNCDESEPG 89
Query: 467 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 646
T KDR I+ +DPH+L+EG ++A A+GA+ A+IY RGEF+ L++AI EA + G +
Sbjct: 90 TFKDRYIIENDPHQLIEGIILACYAIGAKQAFIYCRGEFFEGNKKLRLAIQEAKKRGYLE 149
Query: 647 KNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ + I VH GAGAYI GEETA + S+EG + PRLKPPFPA GL+
Sbjct: 150 APLGEANFSVSIIVHPGAGAYIAGEETAQLNSLEGYRATPRLKPPFPAVSGLY 202
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 173 bits (422), Expect = 4e-42
Identities = 97/205 (47%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Frame = +2
Query: 197 PLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW--IVNEMKTSGLRGRGGA 370
PLA+ VFT L E R Y E LLK D +++ SG+ GRGG
Sbjct: 174 PLANEPVVFTGLRSG-ETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGG 232
Query: 371 GFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA 550
FP K + K + P+YLV NADEGEPGT KDR IM DPH L+EG IA R +GA
Sbjct: 233 AFPMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGA 290
Query: 551 QAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETA 730
+ +IY+R E+ + L+ AIAEA AGL+G GS + F + ++RGAGAYICGEET+
Sbjct: 291 EEGFIYLRSEYPHSFHILEKAIAEARSAGLLGPRILGSDFSFRLRLYRGAGAYICGEETS 350
Query: 731 LIESIEGKQGKPRLKPPFPADVGLF 805
LI S+EGK+ PR KPP ++VGL+
Sbjct: 351 LINSLEGKRAYPRNKPPHLSEVGLW 375
>UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 kDa
subunit; n=1; Desulfotalea psychrophila|Rep: Probable
NADP-reducing hydrogenase, 51 kDa subunit - Desulfotalea
psychrophila
Length = 634
Score = 170 bits (413), Expect = 4e-41
Identities = 83/178 (46%), Positives = 113/178 (63%), Gaps = 2/178 (1%)
Frame = +2
Query: 278 DWYLTKE-ILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 454
D YL E L +G D ++ E+K S LRGRGG GFP KW K + G PKY+V NADE
Sbjct: 166 DGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGFPAARKWEAGRKAT-GHPKYVVCNADE 224
Query: 455 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 634
G+PG DR ++ DPH ++EG IAG +G++ YIY+R E+ + LQ AI +A +
Sbjct: 225 GDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEKGYIYVRAEYPLAIARLQNAIDQAKEK 284
Query: 635 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKP-PFPADVGLF 805
L+G N G+ + FDI + +GAGA++CGE TAL +SI+G +G P+ P P D GLF
Sbjct: 285 NLLGANILGTDFSFDIELFQGAGAFVCGESTALTQSIQGYRGMPKASPRPRTTDEGLF 342
>UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Hydrogen dehydrogenase -
Chlorobium phaeobacteroides BS1
Length = 497
Score = 165 bits (402), Expect = 9e-40
Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 5/192 (2%)
Frame = +2
Query: 251 RLKGALARGDWYL---TKEILLK-GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSD 418
R KGAL D+ L KEIL + I++ + S +RGRGGAGFPTG+KW F ++ +
Sbjct: 116 RRKGALLNHDYPLFSVIKEILPNTSAEEIIDIVSESNIRGRGGAGFPTGLKWKFGSR-AK 174
Query: 419 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEAS 598
G ++++ NADEGEPGT KDR ++ P + EG + AG A+GA +Y+R E+ +
Sbjct: 175 GERRFIICNADEGEPGTFKDRVLLTEYPEMVFEGMVTAGYAVGADLGLLYLRYEYKYMLN 234
Query: 599 NLQVAIAEAYQAGLIGKNSCG-SGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLK 775
L + + + +G N G +DFDI + GAGAYICGEE+ALIES+EGK+G+PR K
Sbjct: 235 YLNGVLDDMRKNNYLGTNIGGVENFDFDIRIQLGAGAYICGEESALIESLEGKRGEPRDK 294
Query: 776 PPFPADVGLFXL 811
PPFP + G L
Sbjct: 295 PPFPVEKGYLNL 306
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 163 bits (395), Expect = 7e-39
Identities = 79/161 (49%), Positives = 108/161 (67%), Gaps = 3/161 (1%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKW-SFMNKP-SDGRPKYLVVNADEGEPGTCKDREIMRHD 499
++E+K + LRGRGGAGF TG+KW + N P G + +V NADEGEPGT KDR ++ +
Sbjct: 230 LDEIKRANLRGRGGAGFTTGLKWEACRNAPLKAGAQRIVVCNADEGEPGTFKDRVLLSRN 289
Query: 500 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDF 676
P + EG +A A+GA ++Y+RGE+ +L +A + L+GK+ G G DF
Sbjct: 290 PDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGLPGADF 349
Query: 677 DIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
DI +H GAGAY+CGEE+ALIES+EGK+G PR +PPFP G
Sbjct: 350 DIEIHVGAGAYVCGEESALIESLEGKRGTPRNRPPFPVTNG 390
>UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;
n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH
dehydrogenase (Quinone) precursor - Victivallis vadensis
ATCC BAA-548
Length = 573
Score = 163 bits (395), Expect = 7e-39
Identities = 79/160 (49%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMN-KPSDGRPKYLVVNADEGEPGTCKDREIMRHD 499
+V+E+K SGLRGRGG GFPTG KW F+ K +D K L+ NADEG+PG DR +M
Sbjct: 136 VVDEVKLSGLRGRGGGGFPTGNKWGFLAAKQAD--EKILICNADEGDPGAFMDRSLMESA 193
Query: 500 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFD 679
PH+++EG LIA A GA +IY R E+ +L++AIA+ Y+ K + +G + +
Sbjct: 194 PHQVLEGMLIAAYATGATKLFIYCRAEYPMAIKHLKIAIAQIYE----HKLNVVNGRELE 249
Query: 680 IFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
I + GAGA++CGEETALI S+EG++G PR +PPFP D G
Sbjct: 250 IIIKEGAGAFVCGEETALIASLEGQRGTPRFRPPFPTDKG 289
>UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain F - Rhodopseudomonas palustris
Length = 428
Score = 162 bits (393), Expect = 1e-38
Identities = 83/164 (50%), Positives = 108/164 (65%), Gaps = 3/164 (1%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR---PKYLVVNADEGEPGTCKDREIMR 493
I+ ++ +GLRGRGGAGFPT KW FM S+ +YL VN DE EPG+ KDR +M
Sbjct: 43 IIAMVEAAGLRGRGGAGFPTANKWRFMRTGSERAGPGARYLCVNGDETEPGSFKDRLLME 102
Query: 494 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 673
PH+L+EG IA A+GA I +R E+ A+ L AIAEA AGL+G++ GSG+D
Sbjct: 103 ALPHQLIEGATIAAYAIGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFD 162
Query: 674 FDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ VH AG YI GEETALI +IEG++ PR +PP+PA GL+
Sbjct: 163 LTMRVHASAGRYIVGEETALIAAIEGERPVPRHRPPYPAVSGLW 206
>UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia
japonica|Rep: NADH dehydrogenase - Griffithsia japonica
(Red alga)
Length = 170
Score = 162 bits (393), Expect = 1e-38
Identities = 73/117 (62%), Positives = 91/117 (77%), Gaps = 2/117 (1%)
Frame = +2
Query: 191 YGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGA 370
+G L+D DR+FTNLY +WRLKGA+ RGDW++TK+++ G WI++E+K R GA
Sbjct: 54 HGGLSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGA 113
Query: 371 -GFPTGMKWSFMNKPS-DGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 535
GFP+G+K+SFM S DGRP YLVVNADE EPGTCKDREI+R DPHKLVEGCL+ G
Sbjct: 114 PGFPSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLLVG 170
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 159 bits (386), Expect = 8e-38
Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 3/177 (1%)
Frame = +2
Query: 284 YLTKEILLKG---TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 454
Y T L+ G + ++ M+ SGLRG GGAGFP G KW + P+ + VN DE
Sbjct: 241 YQTAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVR--DQPAPRLMAVNIDE 298
Query: 455 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 634
GEPGT KDR + DPH+ +EG LIA + +G +A YIY+R E++ + LQ A+ E
Sbjct: 299 GEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQSALEE---- 354
Query: 635 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
L ++ C + I + RGAGAYICGEE+A+IESIEGK+G+PR++PP+ A VGLF
Sbjct: 355 -LRAESPCPLPH---IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLF 407
>UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: NADH-quinone
oxidoreductase chain f - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 406
Score = 159 bits (385), Expect = 1e-37
Identities = 86/180 (47%), Positives = 113/180 (62%)
Frame = +2
Query: 239 RHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSD 418
++ +++ A A G + + IL + IV + SGLRG+GG G G KW M
Sbjct: 11 KNGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWES 70
Query: 419 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEAS 598
+ +YLVVN DE EPGTCKD+ I+ DPH L+EG +I+ A+GA+ AY+YIRGE+ E
Sbjct: 71 DK-RYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFI 129
Query: 599 NLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKP 778
L AI EA N G D +I V++GAGAYICGE+TAL+ESIEGK+G PRLKP
Sbjct: 130 TLTNAIKEA-------ANELG---DLEIIVYKGAGAYICGEKTALLESIEGKRGHPRLKP 179
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 159 bits (385), Expect = 1e-37
Identities = 81/161 (50%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV-NADEGEPGTCKDREIMRHD 499
I++ ++ SGLRG GGAGF TG KW F S+ K+ V+ NADEGEPGT KDR ++
Sbjct: 228 IISAIEESGLRGCGGAGFTTGRKWRFA--ASERAEKHFVICNADEGEPGTFKDRVLLTER 285
Query: 500 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDF 676
PH L+EG IA RA+GA+ +Y+RGE+ L + E GL+GK+ G G+DF
Sbjct: 286 PHLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLLGKDILGVKGFDF 345
Query: 677 DIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
DI + GAGAYICGEE ALI S EG G+P+ +PPFP + G
Sbjct: 346 DIRLQLGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRG 386
>UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium
cryptum JF-5|Rep: NADH dehydrogenase - Acidiphilium
cryptum (strain JF-5)
Length = 434
Score = 158 bits (383), Expect = 2e-37
Identities = 81/205 (39%), Positives = 118/205 (57%), Gaps = 3/205 (1%)
Frame = +2
Query: 200 LADSDRVFTNLY--GRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 373
+A +DR T+ GR + G G + ++ + +V E+K + +RGRGGAG
Sbjct: 1 MAMADRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAG 60
Query: 374 FPTGMKWSFMNKPSDG-RPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA 550
FP G KW + +D R +YLV+NADE EPG+ KDR ++ PH ++EG +I A+ A
Sbjct: 61 FPAGRKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQA 120
Query: 551 QAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETA 730
+ AYI++RGE+ L A+AEA G +G + GSG+ I VH G YICGE +A
Sbjct: 121 ETAYIFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASA 180
Query: 731 LIESIEGKQGKPRLKPPFPADVGLF 805
L ++EGK+ PR +PP GL+
Sbjct: 181 LFSALEGKRAVPRTRPPRSTTSGLW 205
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 154 bits (374), Expect = 2e-36
Identities = 73/163 (44%), Positives = 104/163 (63%)
Frame = +2
Query: 287 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 466
L K + + ++ E+ + LRGRGG GFP G KW + +D KY++VN DEG+PG
Sbjct: 163 LVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWRTTHDAADP-VKYVLVNCDEGDPG 221
Query: 467 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 646
DR IM +PH ++EG I A+GA+ YIY+R E+ NL A+ +A + GL+G
Sbjct: 222 AFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAVENLYAALRQAEEYGLLG 281
Query: 647 KNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLK 775
KN GSG+DF + VH GAGA++ GE +AL+ +IEG+ G+PR K
Sbjct: 282 KNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324
>UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
NAD-dependent formate dehydrogenase beta subunit -
Candidatus Pelagibacter ubique HTCC1002
Length = 552
Score = 154 bits (373), Expect = 3e-36
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 2/200 (1%)
Frame = +2
Query: 212 DRVFTNLYGRHEWRLKGALARGDWYLT--KEILLKGTDWIVNEMKTSGLRGRGGAGFPTG 385
++ F+ Y + + L+ D + K+ + I + S L GRGGAGFPTG
Sbjct: 140 EKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPTG 199
Query: 386 MKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI 565
MKW F K + KY++ NADEG+ G DR ++ P K++ G +I G +G+ +
Sbjct: 200 MKWDFCRK-APSEKKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGVL 258
Query: 566 YIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESI 745
YIRGE+ + AI +AGL+G+N G+ + FD+ + G GAYICGEETALI SI
Sbjct: 259 YIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIASI 318
Query: 746 EGKQGKPRLKPPFPADVGLF 805
EG++ + ++PPFP GL+
Sbjct: 319 EGRRAEVDVRPPFPVTEGLY 338
>UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=9; Proteobacteria|Rep: NAD-reducing hydrogenase, alpha
subunit - Methylococcus capsulatus
Length = 610
Score = 151 bits (366), Expect = 2e-35
Identities = 82/196 (41%), Positives = 116/196 (59%), Gaps = 13/196 (6%)
Frame = +2
Query: 251 RLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFM--------- 403
RL G R L + + L + + E++TS LRGRGGAGF T KW F
Sbjct: 179 RLLGNPVRPGEALERTLALD-RETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAV 237
Query: 404 ---NKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 574
+P+ G +Y+V NADEGEPGT KDR +++ ++ EG + +GA+ ++Y+R
Sbjct: 238 CPPGQPAAGIERYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLR 297
Query: 575 GEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDFDIFVHRGAGAYICGEETALIESIEG 751
GE+ L+ +A + GL+GK+ G G+DFDI + GAGAYICGEE+ALIES+EG
Sbjct: 298 GEYLYLHDQLEAVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGEESALIESLEG 357
Query: 752 KQGKPRLKPPFPADVG 799
+G PR +PP+P G
Sbjct: 358 NRGVPRNRPPYPVTHG 373
>UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n=1;
Schizosaccharomyces pombe|Rep: Iron sulfur cluster
assembly protein - Schizosaccharomyces pombe (Fission
yeast)
Length = 452
Score = 149 bits (360), Expect = 1e-34
Identities = 82/204 (40%), Positives = 122/204 (59%), Gaps = 5/204 (2%)
Frame = +2
Query: 215 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 394
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG GFPTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 395 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 559
+ K + GR + ++VNA E + G+ KDR ++RH+PHK++EG +IA RA+ A A
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152
Query: 560 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIE 739
Y++IR ++Y E +Q I +AY L+GKN G+ ++ +H GAG+YI GEE+ALI+
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212
Query: 740 SIEGKQGKPRLKPPFPADVGLFXL 811
S++G+ P + GLF L
Sbjct: 213 SLQGEFPVPDIPINNTITSGLFGL 236
>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
beta subunit; n=41; Proteobacteria|Rep: Formate
dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 585
Score = 143 bits (347), Expect = 4e-33
Identities = 75/163 (46%), Positives = 99/163 (60%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 496
D +V + +GLRG GGAGFP KW + + P+++ VN DEGEPGT KDR +
Sbjct: 217 DAVVAALDAAGLRGLGGAGFPAARKWRTV--AAQPAPRFMAVNIDEGEPGTFKDRHYLET 274
Query: 497 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 676
DPH+ +EG LIA +G +IYIR E+ L+ +AE S
Sbjct: 275 DPHRFIEGMLIAAHVVGIDGIWIYIRDEY----PALRRLLAEELDRVRAAWPDVPS---- 326
Query: 677 DIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
I + RGAGAY+CGEE+A+IESIEGK+G PRL+PP+ A+VGLF
Sbjct: 327 -IEIRRGAGAYVCGEESAMIESIEGKRGMPRLRPPYVAEVGLF 368
>UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n=1;
Psychromonas ingrahamii 37|Rep: Hydrogenase,
NADP-reducing subunit C - Psychromonas ingrahamii
(strain 37)
Length = 588
Score = 140 bits (339), Expect = 4e-32
Identities = 69/156 (44%), Positives = 94/156 (60%)
Frame = +2
Query: 332 EMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKL 511
E+ SGLRG GGAGF T KW SD +Y+V NADEGEPGT KDR ++ L
Sbjct: 203 EIDKSGLRGCGGAGFKTAEKWKSCLL-SDDNQRYVVCNADEGEPGTFKDRVLLNSYADLL 261
Query: 512 VEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVH 691
+EG + +GAQ +IY+R E+ + L + A L+G + S FDI +
Sbjct: 262 IEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLLGAHILNSELSFDIEIF 321
Query: 692 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
GAG+Y+CGEE+AL+ES+EG++ PR++PPFP G
Sbjct: 322 MGAGSYVCGEESALLESLEGRRAIPRIRPPFPVTHG 357
>UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 453
Score = 139 bits (337), Expect = 7e-32
Identities = 69/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 505
+ E+K +GLRGRGG+GFPT +KW + R KY+V N EGEPG+ KD ++ +PH
Sbjct: 57 IEELKEAGLRGRGGSGFPTAIKWEKVAHHRI-REKYVVANGSEGEPGSHKDHFLIETNPH 115
Query: 506 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIF 685
+++EG +IA A+ A+ A ++++ F L+ A EA + G +G GS D+
Sbjct: 116 QILEGMIIASFAVRARKAILFVKDSFPRGIDALKKARDEAREEGFLGDRILGSELSLDLE 175
Query: 686 VHRGAGAYICGEETALIESIEGKQGKPRLKPP-FPADVGLF 805
+ G AYI GEETAL+E++EG+ KPR KPP +P D GL+
Sbjct: 176 IFVGPSAYIAGEETALLEALEGRLPKPRPKPPGYPTDRGLY 216
>UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG1894:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Magnetospirillum magnetotacticum MS-1
Length = 514
Score = 136 bits (329), Expect = 7e-31
Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADEGEPGTCKDREIMR 493
D ++ E++ +GLRG GGAGFPT KW + +P P+ +VVNADEGEPGT KDR ++
Sbjct: 165 DEVLAELERAGLRGMGGAGFPTARKWRAVAARPG---PRLVVVNADEGEPGTFKDRWFLQ 221
Query: 494 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 673
+ +++EG LIA A+ A Y+Y+R E Y + L + A +
Sbjct: 222 TNAARVLEGALIAAWAVEADEVYLYLRDE-YADLHKLLTVLIRALPGSV----------- 269
Query: 674 FDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ + RGAGAY+CGEE+ALIES+EGK+G PR +PP+ A+VGLF
Sbjct: 270 -PVHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLF 312
>UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2;
Actinomycetales|Rep: NADH dehydrogenase - Arthrobacter
sp. (strain FB24)
Length = 566
Score = 134 bits (325), Expect = 2e-30
Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Frame = +2
Query: 281 WYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADE 454
W + ++ T + I+ ++ + LRGRGGAGF KW + ++ P+ P+ +V N DE
Sbjct: 186 WSVWPDVAASATPEDILLRVEAAQLRGRGGAGFRAAAKWRAALDHPA---PRVVVANGDE 242
Query: 455 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 634
G+PG+ DR +M D H+++EG ++A A+GA +++R E+ A+ L+ A+ EA +A
Sbjct: 243 GDPGSYADRLLMEQDAHRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRA 302
Query: 635 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVG 799
G +G + GSG+ ++ V GAG+Y+ GEETAL+ + G +G R +PPFP + G
Sbjct: 303 GHLGPDIAGSGFSLEVRVAEGAGSYVSGEETALLNGLAGLRGVVRPRPPFPTERG 357
>UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia
pickettii|Rep: NADH dehydrogenase - Ralstonia pickettii
12J
Length = 525
Score = 131 bits (317), Expect = 2e-29
Identities = 68/161 (42%), Positives = 99/161 (61%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+VN + S LRGRGGA FP G+KW + KY+VVNADEG+PG DR ++ DP
Sbjct: 163 LVNMVAASRLRGRGGAAFPAGIKWQAVASAC-AETKYVVVNADEGDPGAFSDRFLLEEDP 221
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
+L+E IA A+GA+ YIYIR E+ + + A+ +A AG +G + ++
Sbjct: 222 FRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGPT-----LELEL 276
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
V G GAYICGEET+L+ ++EG++ + R +PP ++ GLF
Sbjct: 277 VV--GQGAYICGEETSLLNALEGRRPEVRPRPPQISECGLF 315
>UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase
subunit - Symbiobacterium thermophilum
Length = 394
Score = 123 bits (297), Expect = 5e-27
Identities = 67/180 (37%), Positives = 107/180 (59%), Gaps = 2/180 (1%)
Frame = +2
Query: 269 ARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGF--PTGMKWSFMNKPSDGRPKYLVV 442
ARG + + +G+ W++ ++ +GLRGRGG+G P G KW + S +Y+V
Sbjct: 21 ARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQRV-AASRVPERYVVA 79
Query: 443 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
NA E + + KDR ++ PH+++EG LIA +A+GA+ AY+Y+RG+ + A+AE
Sbjct: 80 NAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEALDGARDAVAE 139
Query: 623 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
A AGL+G S + V A + GEETA+++++EG +G P+ KPP P ++GL
Sbjct: 140 AGAAGLLGGVS--------VTVQPSAPTAVSGEETAILDALEGLEGYPQPKPPRPEEIGL 191
>UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3;
Proteobacteria|Rep: NADH dehydrogenase - Xanthobacter
sp. (strain Py2)
Length = 422
Score = 114 bits (275), Expect = 2e-24
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMN-KPSDGRPKYLVVNADEGEPGTCKDREIMR 493
D I+ +K + LRG GGAGFPT KWS P D KY+V N +E EPGT KDR ++R
Sbjct: 45 DAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCD--EKYVVCNGNEDEPGTFKDRHLLR 102
Query: 494 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 673
PH+++EG LIA A+ A Y+ ++ A+ E + L+ S G
Sbjct: 103 WTPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRP 162
Query: 674 FDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
+ V +G YI GEETA++ ++G PR KPPFP + G+
Sbjct: 163 VTLTVAPSSGRYIGGEETAIVSWLDGGFPFPRRKPPFPFESGV 205
>UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F
(1st module) EC: 1.6.5.3; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH dehydrogenase I
chain F (1st module) EC: 1.6.5.3 - Candidatus Kuenenia
stuttgartiensis
Length = 675
Score = 113 bits (272), Expect = 5e-24
Identities = 65/161 (40%), Positives = 91/161 (56%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
IV E+ SGLRGRGGAGFPTG+KW + + + +Y+V NA EGEPGT KDR ++R +P
Sbjct: 263 IVTELLASGLRGRGGAGFPTGVKWRTLVRHTCPT-RYVVCNAAEGEPGTFKDRYLLRKNP 321
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
+ +EG LIA A+ A YI ++ F ++ AI+E GL+ +I
Sbjct: 322 YATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQAISEMASKGLMD--------GIEI 373
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLF 805
+ G Y+ GEE AL+ +EG PR P ++GLF
Sbjct: 374 KIVEGPEEYLFGEEKALLNVVEGFPPMPREAYCPPYEIGLF 414
>UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: HtxX -
Xanthobacter flavus
Length = 496
Score = 109 bits (262), Expect = 9e-23
Identities = 60/148 (40%), Positives = 85/148 (57%)
Frame = +2
Query: 356 GRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 535
GR G GFP G KW + + G P ++VN DEGE KDR I+ DPH ++E L+A
Sbjct: 158 GRAGVGFPVGEKWRQV-MAAGGTP-VVIVNGDEGELAIFKDRFILETDPHGVLEAALVAA 215
Query: 536 RAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYIC 715
R GA ++Y+R ++ + ++ A+ E AGL + G G + + R GA+IC
Sbjct: 216 RVTGADLVFLYVRDDYAPIHAIVRRALEEVAAAGL----AEGIGLE----LRRSGGAFIC 267
Query: 716 GEETALIESIEGKQGKPRLKPPFPADVG 799
GEETALI S+EG+ +P +PPFP G
Sbjct: 268 GEETALIASLEGRAARPTERPPFPTTRG 295
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 99.5 bits (237), Expect = 9e-20
Identities = 62/177 (35%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
Frame = +2
Query: 290 TKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGT 469
TK+ + G + ++ E+ S L GRGGAGF TG KW K + KY+V NADEG P T
Sbjct: 832 TKKAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYK-TPASDKYVVCNADEGLPST 890
Query: 470 CKDREIMRHDPHK--LVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 643
KD ++ ++ + + G I + +GA+ ++Y+R E+ N L+ +I +
Sbjct: 891 YKDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDV------ 944
Query: 644 GKNSCGSGYDFDIFVHRGAGAYICGEETALIESIEGKQGKPRLKPP---FPADVGLF 805
+++C D + G G Y+ GEE A ESIEG+ PR P FP GLF
Sbjct: 945 -QSTCPELADLKYEIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNIFPTMEGLF 1000
>UniRef50_A3Q2V2 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=8; Mycobacterium|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Mycobacterium sp. (strain JLS)
Length = 433
Score = 87.0 bits (206), Expect = 5e-16
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV-NADEGEPGTCKDREIMRHD 499
+++E++ SGL GRGGA FP +K + R + + N +EGEP + KDR ++RH
Sbjct: 49 LLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108
Query: 500 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFD 679
PH +++G +A R + A+ A +Y+ A +++ A+ + L G +
Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYVSDP--ESARSVETALTQVDSTVLDGVSIS------V 160
Query: 680 IFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
+ V G Y+ GEETA + +I+G KP KPP P + G+
Sbjct: 161 VVVDPG---YVAGEETAAVRAIDGGPAKPTDKPPRPFEEGV 198
>UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2;
n=1; Brevundimonas diminuta|Rep: Putative
uncharacterized protein ORF2 - Brevundimonas diminuta
(Pseudomonas diminuta)
Length = 401
Score = 82.6 bits (195), Expect = 1e-14
Identities = 49/150 (32%), Positives = 74/150 (49%)
Frame = +2
Query: 350 LRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLI 529
L G+GGA FP+ K ++ + R KYLVVN E EPG+ KD ++ H P ++EG L
Sbjct: 48 LSGKGGANFPSARKMRLFHQQAAPR-KYLVVNGGEHEPGSAKDDWLLLHHPDTVIEGALC 106
Query: 530 AGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAY 709
A+GA + + NE VA A + G + + Y
Sbjct: 107 VAHALGATHILVAV-----NEGRAATVAAVREAAAAIAIAGRLFPGIEVVLV----PDEY 157
Query: 710 ICGEETALIESIEGKQGKPRLKPPFPADVG 799
+ GEETAL++++ G+ KP +PP+P + G
Sbjct: 158 VVGEETALLQAVAGQVAKPVRRPPYPIESG 187
>UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 61.7 bits (143), Expect = 2e-08
Identities = 45/151 (29%), Positives = 72/151 (47%)
Frame = +2
Query: 350 LRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLI 529
L GRGGA FP K + P+ R + LV N E EP + KDR +M PH +++G L
Sbjct: 50 LLGRGGAAFPVATK--LLAVPTGSRTQVLV-NGSESEPASRKDRTLMTLTPHLVLDGALA 106
Query: 530 AGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAY 709
RA+ + ++ I ++L+ A+ E + I + + + R AG +
Sbjct: 107 VARAL--RTRHVTIAVHDAAALASLRTALDERARDEPIHER---------VDLRRTAGRF 155
Query: 710 ICGEETALIESIEGKQGKPRLKPPFPADVGL 802
+ GE AL+ ++G P + P+D GL
Sbjct: 156 VSGEVRALLRGLDGGPAVPPSRRTLPSDSGL 186
>UniRef50_A5N6H2 Cluster: RnfC related NADH dehydrogenase; n=2;
Clostridium kluyveri DSM 555|Rep: RnfC related NADH
dehydrogenase - Clostridium kluyveri DSM 555
Length = 442
Score = 59.3 bits (137), Expect = 1e-07
Identities = 46/152 (30%), Positives = 77/152 (50%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ ++K +G+ G GGAGFPT +K +N + KY +VNA E EP D+ +MR+
Sbjct: 3 LLKKVKDAGIIGAGGAGFPTHVK---LNT----KVKYFIVNALECEPLLQSDKYLMRNHS 55
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
++V I G+++GA+ I ++ +YNE L +I + NS ++
Sbjct: 56 DEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTNSIKKL--------NS-----SVEL 102
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKP 778
F++R Y G+E L+ + GK P P
Sbjct: 103 FLNR--SFYPAGDEQILVYEVTGKTIAPGAIP 132
>UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 58.8 bits (136), Expect = 2e-07
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Frame = +2
Query: 350 LRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 526
+RGRGGA FP +K + ++ GR +VVN EGEP + KD + PH +++G +
Sbjct: 57 VRGRGGAAFPFEVKLRTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDGAV 116
Query: 527 IAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGA 706
A+GA+ ++ + E + ++ A+AE +H G
Sbjct: 117 ATAYALGARELHVVVPQERPLVGTAIRAALAERRDR-------------LRTHLHTAQGR 163
Query: 707 YICGEETALIESIEGKQGKP 766
++ G+ A++E + G+ P
Sbjct: 164 FVAGQARAVLELMAGRPNLP 183
>UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3;
Streptomyces|Rep: Putative oxidoreductase - Streptomyces
coelicolor
Length = 525
Score = 56.8 bits (131), Expect = 6e-07
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Frame = +2
Query: 311 GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPS--DGRPKYLVVNADEGEPGTCKDRE 484
G + + + L+GRGGAGFP K + + + G +VVN E +P KD
Sbjct: 33 GGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDTV 92
Query: 485 IMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGS 664
++ PH +++G L+ A+GA+ + + E + +++ A+AE GL NS S
Sbjct: 93 LINRAPHLILDGALLVAEALGARTLVVGVTRE--STQRSMEAALAE---RGL--SNSRRS 145
Query: 665 GYDFDIFVHRGAGAYICGEETALIESIEGKQGKP 766
V R + G +LI SI+G P
Sbjct: 146 A--LRASVQRNPVRMVTGSAASLIRSIDGGPAIP 177
>UniRef50_Q73PG1 Cluster: Na(+)-translocating NADH-quinone
reductase, A subunit; n=1; Treponema denticola|Rep:
Na(+)-translocating NADH-quinone reductase, A subunit -
Treponema denticola
Length = 480
Score = 55.2 bits (127), Expect = 2e-06
Identities = 39/144 (27%), Positives = 68/144 (47%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 505
+ ++ +G+ G GGA FPT +K ++ P D + +Y++ N E EP C D + D
Sbjct: 124 LKRVRDAGITGMGGASFPTHVK---LSPPPDAKIEYVIANGAECEPYLCTDAATIFSDSD 180
Query: 506 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIF 685
+V+G I R +GA+ I + + L+ AI++ I N +G +DI
Sbjct: 181 SIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISK------IKANPIAAG-AYDIS 233
Query: 686 VHRGAGAYICGEETALIESIEGKQ 757
V Y G E L +++ ++
Sbjct: 234 VQLCKTKYPQGGEKTLTDAVVNRE 257
>UniRef50_A7G5W1 Cluster: NADH dehydrogenase family protein; n=4;
Clostridium botulinum A|Rep: NADH dehydrogenase family
protein - Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A)
Length = 372
Score = 54.8 bits (126), Expect = 3e-06
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Frame = +2
Query: 257 KGALARGDWYLTKEIL-LKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKY 433
K + + D TKE + +K D +V+ + +G+ G GGAGFPT +K NK DG Y
Sbjct: 57 KEIIIKADETQTKEFVKIKKCDNLVDTVFEAGIVGAGGAGFPTHIKLKADNK--DG---Y 111
Query: 434 LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 613
++ N E EP + +++ P ++ G A +A ++ YI I+ + L+ A
Sbjct: 112 IIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSKKGYIAIKSKHEKAVRVLEEA 171
Query: 614 I 616
+
Sbjct: 172 L 172
>UniRef50_Q44SY7 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=5; Chlorobiaceae|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Chlorobium limicola DSM 245
Length = 441
Score = 54.0 bits (124), Expect = 5e-06
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = +2
Query: 218 VFTNLYGRHEWRLKGA-LARGDWY-LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMK 391
VF G+ EW L+G DW L+KE +LK + SG+ G GGAGFP+G+K
Sbjct: 95 VFITPDGKDEW-LEGLNTPECDWKKLSKEEILK-------RITDSGIVGMGGAGFPSGVK 146
Query: 392 WSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC-LIAGRAMGAQAAYIY 568
++ P D +++N E EP D +M +P +++G +I G +AYI
Sbjct: 147 ---LSPPKDKTIDTIILNGAECEPFLTADHRVMVEEPEAIIKGLEIITSLFQGKVSAYIG 203
Query: 569 I 571
I
Sbjct: 204 I 204
>UniRef50_A0LLS5 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=3; Deltaproteobacteria|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 440
Score = 53.6 bits (123), Expect = 6e-06
Identities = 48/164 (29%), Positives = 75/164 (45%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ +++ +GL G GGAGFPT +K ++ P R L++NA E EP D M P
Sbjct: 126 LLEKIRNAGLVGLGGAGFPTHLK---LSPPPGTRLDKLILNAAECEPYLNCDNRTMIEFP 182
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
H+++ G I R +G + +I I L A AE+ + D I
Sbjct: 183 HEILTGARIILRILGIKECHIGIENNKQEAIWVLSRAAAES------------TAPDCKI 230
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLFXLS 814
V+ Y G E LI++I G++ P P DVG+ ++
Sbjct: 231 SVNPLMVKYPQGSEKQLIQTITGRRVP---YPGLPFDVGVMVIN 271
>UniRef50_Q92CR5 Cluster: Lin1106 protein; n=13; Listeria|Rep:
Lin1106 protein - Listeria innocua
Length = 454
Score = 52.8 bits (121), Expect = 1e-05
Identities = 33/100 (33%), Positives = 54/100 (54%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ ++K +G+ G GGAGFPT K+S G +YL++NA E EP D +MR+
Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
+ ++ + +GA+ A I + + E + L+ AI E
Sbjct: 59 VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITE 98
>UniRef50_Q21I18 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Saccharophagus degradans 2-40|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 745
Score = 52.8 bits (121), Expect = 1e-05
Identities = 44/162 (27%), Positives = 68/162 (41%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 496
D +V +++ +G+ G GGAGFPT +K +N S+ K L+ N E EP D +MR
Sbjct: 125 DRLVQKIRAAGIVGMGGAGFPTAIK---VNPKSNKHVKTLIFNGTECEPYITADDMLMRE 181
Query: 497 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 676
+V+G + R MG E + I + + G D
Sbjct: 182 RADDIVKGVQLIARFMG--------------EVEETLIGIEDNKPEAIAAMQKAAEGTDI 227
Query: 677 DIFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
++ V Y G E LI+ + GK+ PAD+G+
Sbjct: 228 EVVVF--PTKYPSGGEKQLIQILTGKEVP---SGGLPADIGI 264
>UniRef50_A1WT48 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Halorhodospira halophila SL1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 448
Score = 52.8 bits (121), Expect = 1e-05
Identities = 32/99 (32%), Positives = 51/99 (51%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+V ++ +G+ G+GGA FPT +K++ P LVVN E EP D +M
Sbjct: 131 LVEAIRDAGIVGQGGASFPTHLKFAV---PEGYTVDTLVVNGCECEPFLSADHRLMVEAT 187
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
+++G +A RA+GA A I + + + LQ A+A
Sbjct: 188 DSIIDGVRLAMRAVGAPEAVIGVEDNKPDAVAALQAAVA 226
>UniRef50_Q2J9U3 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Frankia|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Frankia sp. (strain CcI3)
Length = 510
Score = 52.0 bits (119), Expect = 2e-05
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Frame = +2
Query: 434 LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 613
+V NA EGEP + KD ++ PH +++G +A A+GA A++Y++ + ++ A
Sbjct: 166 VVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVYLKPG--PAVTAVRRA 223
Query: 614 IAEAYQAGLIGKNSCGSGYD-FDIFVHRGAGAYICGEETALIESIEGKQGKPR 769
+A+ A G+D F + + ++ GE +A+I ++EG +PR
Sbjct: 224 LAQRRAA----------GWDRFTVQIREAPETFVAGEASAVIAALEGGAARPR 266
>UniRef50_Q67R12 Cluster: Na+-transporting NADH-quinone reductase
subunit 1; n=2; Firmicutes|Rep: Na+-transporting
NADH-quinone reductase subunit 1 - Symbiobacterium
thermophilum
Length = 446
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = +2
Query: 320 WIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHD 499
+I + ++ +GL G GGAGFP +K KP P +++N E EP D +M
Sbjct: 128 FIRDRVRQAGLVGMGGAGFPAAVK--LTPKPGT-EPDVVILNGAECEPAITSDHRLMLEH 184
Query: 500 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
P ++V G + RA GA+ I + + A L +A
Sbjct: 185 PEQVVLGLRLFMRASGAKRGIIAVEANKPDAAGKLSQLVA 224
>UniRef50_Q0EPY6 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=3; Clostridia|Rep: Electron transport
complex, RnfABCDGE type, C subunit - Thermoanaerobacter
ethanolicus X514
Length = 443
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ ++ +G+ G GGAGFPT +K ++ PSD + ++VN E EP D +M P
Sbjct: 127 IIEIIREAGITGMGGAGFPTHVK---LSPPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183
Query: 503 HKLVEGCLIAGRAMGAQAAYI 565
K+V G +A+G + I
Sbjct: 184 EKIVFGLKAIMKAVGVERGII 204
>UniRef50_Q0AAG9 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Chromatiales|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Alkalilimnicola ehrlichei (strain MLHE-1)
Length = 515
Score = 50.8 bits (116), Expect = 4e-05
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +2
Query: 335 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHDPHKL 511
++ +G+ G GGA FPT +K +N PSD P L+ N E + TC DR +MR P ++
Sbjct: 132 VREAGIVGLGGAAFPTAIK---LNPPSDTLPDTLIANGVECDTHITCDDR-LMRERPEQI 187
Query: 512 VEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
++G A + I + G+ A L+ A+A
Sbjct: 188 LDGVATAADMLNVVRIRIAVEGDKPEAARALRDALA 223
>UniRef50_A7BY78 Cluster: Electron transport complex protein rnfC;
n=1; Beggiatoa sp. PS|Rep: Electron transport complex
protein rnfC - Beggiatoa sp. PS
Length = 446
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 505
+N ++ +G+ G GGA FP+ +K++ P + K+LV+N E EP D +M P
Sbjct: 133 INHVQKAGIVGMGGAAFPSHVKYAL---PDGMQIKHLVINGAECEPYLTNDHRLMLERPD 189
Query: 506 KLVEGCLIAGRAMGAQAAYI 565
L+ G I + +GA A I
Sbjct: 190 TLLRGIEIVRQKLGATQATI 209
>UniRef50_UPI0000E87BCA Cluster: predicted NADH:ubiquinone
oxidoreductase, subunit RnfC; n=1; Methylophilales
bacterium HTCC2181|Rep: predicted NADH:ubiquinone
oxidoreductase, subunit RnfC - Methylophilales bacterium
HTCC2181
Length = 510
Score = 49.2 bits (112), Expect = 1e-04
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 505
+ ++ SG+ G GGA FPT +K + N+ K L+VNA E EP D +MR
Sbjct: 130 IKKISESGIVGLGGATFPTHLKLNNNNEV-----KTLIVNAAECEPYITCDDMLMREKSA 184
Query: 506 KLVEGCLIAGRAMGAQAAYIYI 571
+L+EG +A +GAQ A I I
Sbjct: 185 ELIEGIRLALHLLGAQNAIIGI 206
>UniRef50_Q896I5 Cluster: RnfC/nqrF; n=18; Clostridiales|Rep:
RnfC/nqrF - Clostridium tetani
Length = 449
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHD 499
I+N +K +G+ G GGA FPT +K + P D + +Y+VVNA E EP TC R ++ H
Sbjct: 137 IINIVKEAGIVGMGGATFPTNVK---LTPPPDKKIEYIVVNAAECEPYLTCDHRMMLEHS 193
Query: 500 PHKLVEG 520
++++G
Sbjct: 194 -KEIIKG 199
>UniRef50_A6PV28 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Victivallis vadensis ATCC
BAA-548|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Victivallis vadensis ATCC
BAA-548
Length = 239
Score = 48.8 bits (111), Expect = 2e-04
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 344 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 523
+GL G GGA FPT +K ++ P D L++N E EP D +M P +++EG
Sbjct: 135 AGLVGMGGAAFPTHVK---LSPPPDKTIDTLILNGAECEPYLTADHRLMLEQPERVLEGA 191
Query: 524 LIAGRAMGAQAAYI 565
I+ + + + YI
Sbjct: 192 AISAKILNVKNVYI 205
>UniRef50_A1I872 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Electron transport complex,
RnfABCDGE type, C subunit - Candidatus Desulfococcus
oleovorans Hxd3
Length = 454
Score = 48.8 bits (111), Expect = 2e-04
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +2
Query: 275 GDWYLTKEILLKGTDWIVNE-MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNA 448
GDW K+ K ++E + +G+ G GGA FPT +K P+D RP L++N
Sbjct: 126 GDW--PKDAADKHDPKAISEAISAAGIVGLGGAAFPTHVK----IMPNDKRPVDALLING 179
Query: 449 DEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYI 571
E EP D IM ++ G L+AGRA+GA+ + I
Sbjct: 180 CECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGI 220
>UniRef50_A6TJY1 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Alkaliphilus
metalliredigens QYMF|Rep: Respiratory-chain NADH
dehydrogenase domain, 51 kDa subunit - Alkaliphilus
metalliredigens QYMF
Length = 448
Score = 48.4 bits (110), Expect = 2e-04
Identities = 33/98 (33%), Positives = 52/98 (53%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ ++ +G+ G GGAGFPT +K DG +YL+VNA E EP D+ I RH
Sbjct: 3 ILEKIFEAGVVGAGGAGFPTHIKL-------DGVAEYLLVNAVECEPLLETDKFITRHKS 55
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 616
++++ I G + A+ I ++ + E L+ AI
Sbjct: 56 EEIIKAMEIMGNHIQAKEMVIGLKKKNTKEIQALREAI 93
>UniRef50_Q9WY86 Cluster: Electron transport complex protein,
putative; n=5; Bacteria|Rep: Electron transport complex
protein, putative - Thermotoga maritima
Length = 451
Score = 47.6 bits (108), Expect = 4e-04
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ +K +G+ G GGA FPT +K ++ P + + L+VN E EP D +M
Sbjct: 138 ILEIIKKAGIVGLGGAMFPTHVK---LSPPPEKKVDTLIVNGAECEPVLTIDHRLMLERA 194
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 607
+++G LI + +G Q A + + + NL+
Sbjct: 195 EDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLK 229
>UniRef50_A4CB98 Cluster: Electron transport complex protein RnfC;
n=3; Alteromonadales|Rep: Electron transport complex
protein RnfC - Pseudoalteromonas tunicata D2
Length = 872
Score = 47.6 bits (108), Expect = 4e-04
Identities = 33/107 (30%), Positives = 52/107 (48%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+N+++++G+ G GGAGF T +K + K YL+VN E EP D +M+
Sbjct: 136 IINKIRSAGISGMGGAGFATYVKAQPLQKID-----YLIVNGVECEPYITSDDRLMQEHA 190
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 643
++EG LI + + I I + +Q A A+ Y LI
Sbjct: 191 TTIIEGSLILAHVLKPERILIGIEDNKPEAIAAMQAA-AKPYPHILI 236
>UniRef50_Q482U5 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Colwellia psychrerythraea 34H|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 788
Score = 47.2 bits (107), Expect = 5e-04
Identities = 33/99 (33%), Positives = 47/99 (47%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
IV ++ +G+ G GGAGFPT +K S +KP K+L++N E EP D +M
Sbjct: 137 IVKKIANAGIAGMGGAGFPTHIKVS--SKPD---IKFLIINGAECEPYITADDLLMMEQS 191
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
+ +V+G I R + I I LQ A A
Sbjct: 192 NAIVDGIKILDRLLTPTVILIGIEANKPKAIKALQKATA 230
>UniRef50_A6NTM2 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 452
Score = 46.8 bits (106), Expect = 7e-04
Identities = 29/99 (29%), Positives = 51/99 (51%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+ +K +G+ G GGAGFPT +K S + + +VNA E EP D+ + R P
Sbjct: 3 LTEAVKAAGVVGAGGAGFPTHVKLS-------AKAECFLVNAAECEPLIETDKYLCRTFP 55
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
++V +GA+ I ++G++ E + L+ +I+
Sbjct: 56 DRIVAAAAAIAAHLGAKRTVIALKGKYKAEIAALEDSIS 94
>UniRef50_Q0PIB6 Cluster: Ethanolamine utilization Fe-S center
protein eut; n=1; Heliobacillus mobilis|Rep:
Ethanolamine utilization Fe-S center protein eut -
Heliobacillus mobilis
Length = 444
Score = 46.4 bits (105), Expect = 0.001
Identities = 29/87 (33%), Positives = 47/87 (54%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
IV +K +G+ G GGAGFPT +K MN +D ++ N E EP + +M +
Sbjct: 5 IVKAVKEAGVVGAGGAGFPTHIK---MNASAD----IIIANGAECEPLLRSHQHLMAAES 57
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEF 583
++V G + A GAQ +YI ++ ++
Sbjct: 58 DRVVLGLIAVMLATGAQKSYIGLKKKY 84
>UniRef50_Q8AA47 Cluster: Na+-transporting NADH:ubiquinone
oxidoreductase, Electron transport complex protein rnfC;
n=10; Bacteroidetes|Rep: Na+-transporting
NADH:ubiquinone oxidoreductase, Electron transport
complex protein rnfC - Bacteroides thetaiotaomicron
Length = 445
Score = 46.0 bits (104), Expect = 0.001
Identities = 35/118 (29%), Positives = 59/118 (50%)
Frame = +2
Query: 287 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 466
L KE L + IV ++ +G+ G GGA FPT +K + P + + +++NA E EP
Sbjct: 115 LVKECELSSEE-IVKKIADAGIVGLGGACFPTQVK---LCPPPSFKAECVIINAVECEPY 170
Query: 467 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGL 640
D ++M +++ G I +A+ A+I I +A L +A +Y AG+
Sbjct: 171 LTADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENN-KPDAIELMTKVASSY-AGI 226
>UniRef50_Q2SKU6 Cluster: Predicted NADH:ubiquinone oxidoreductase,
subunit RnfC; n=4; Proteobacteria|Rep: Predicted
NADH:ubiquinone oxidoreductase, subunit RnfC - Hahella
chejuensis (strain KCTC 2396)
Length = 821
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ ++ G+ G GGAGFPT +K ++ P + + L++NA E EP D +MR
Sbjct: 127 LLERVRQGGIAGMGGAGFPTAIK---LHPPRNDKVNALILNAAECEPYITADDMLMRERA 183
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 613
+++ G I + + + I I + LQ A
Sbjct: 184 DEVIRGMEIMAQLLEPEECLIGIEDNKPEAIAALQQA 220
>UniRef50_Q1Q5X5 Cluster: Conserved hypothetical iron sulfur
protein; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Conserved hypothetical iron sulfur protein - Candidatus
Kuenenia stuttgartiensis
Length = 446
Score = 45.6 bits (103), Expect = 0.002
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +2
Query: 341 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 520
++G+ G GGA FPT +K + P D +V+N E EP D +MR++ ++++EG
Sbjct: 139 SAGIVGLGGATFPTHVK---LTPPKDKTIDTIVMNGAECEPYLTCDHYVMRNNANEVLEG 195
Query: 521 CLIAGRAMGAQAAYIYI 571
+ + +G + A+I I
Sbjct: 196 LRLVMKCIGCKKAHIGI 212
>UniRef50_A1AVH8 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; sulfur-oxidizing symbionts|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Ruthia magnifica subsp. Calyptogena magnifica
Length = 497
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ ++ SG+ G GGAGFPT +K + + L++N E EPG D +M+ P
Sbjct: 126 MIDCIQKSGIVGLGGAGFPTHVKLGKIKQCHT-----LIINGTECEPGVMCDNALMQFYP 180
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGE 580
+++ G I GA+ A I I +
Sbjct: 181 REIIRGVEILLYICGAERAIIAIEDD 206
>UniRef50_Q8RIJ6 Cluster: Nitrogen fixation iron-sulphur protein
RNFC; n=6; Bacteria|Rep: Nitrogen fixation iron-sulphur
protein RNFC - Fusobacterium nucleatum subsp. nucleatum
Length = 441
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ ++ G+ G GGA FPT +K +N P + + L++N E EP D +M +P
Sbjct: 129 LLDIIREKGIVGIGGATFPTHVK---LNPPPNTQLDSLILNGAECEPYLNSDNRLMLENP 185
Query: 503 HKLVEGCLIAGRAMGAQAAYIYI 571
+VEG I + + Y+ I
Sbjct: 186 KSIVEGIKIIKKILNVPNVYVGI 208
>UniRef50_Q31GU4 Cluster: NADH oxidoreductase, RnfABCDGE type, C
subunit; n=1; Thiomicrospira crunogena XCL-2|Rep: NADH
oxidoreductase, RnfABCDGE type, C subunit -
Thiomicrospira crunogena (strain XCL-2)
Length = 704
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 344 SGLRGRGGAGFPTGMKWSFMNKPSD-GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 520
+G+ G GGAGFPT F PS G+ KYL++N E EP D +M+ +V+G
Sbjct: 159 AGIVGMGGAGFPT-----FAKIPSQPGQIKYLLINGAECEPFITCDDMLMQTRAEDIVQG 213
Query: 521 CLIAGRAMG 547
+I +++G
Sbjct: 214 AMIVAQSLG 222
>UniRef50_Q18V42 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=3; Peptococcaceae|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Desulfitobacterium hafniense (strain DCB-2)
Length = 451
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/99 (27%), Positives = 53/99 (53%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ ++K +G+ G GGAGFPT +K + + + ++VN E EP D+++M
Sbjct: 5 LIEKIKKAGVVGAGGAGFPTHVK-------VNSKARTVLVNGAECEPLLRVDQQLMAGQA 57
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
K+V G + GA+ I ++ ++++ S L+ I+
Sbjct: 58 SKVVMGLELVMSVTGAKEGIISLKHKYHDAISALEKEIS 96
>UniRef50_Q0VP39 Cluster: Electron transport complex protein rnfC;
n=4; Proteobacteria|Rep: Electron transport complex
protein rnfC - Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573)
Length = 991
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+V+ ++ +G+ G GGAGFPT +K +N R + L++NA E EP D +MR
Sbjct: 156 LVDIIRHAGIAGMGGAGFPTSIK---VNLGDHQRVEQLIINAVECEPYITADDRLMRERA 212
Query: 503 HKLVEG 520
++V G
Sbjct: 213 EQIVTG 218
>UniRef50_Q603B2 Cluster: Electron transport complex, C subunit;
n=1; Methylococcus capsulatus|Rep: Electron transport
complex, C subunit - Methylococcus capsulatus
Length = 523
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/79 (31%), Positives = 39/79 (49%)
Frame = +2
Query: 344 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 523
+G+ G GGA FPT +K P L++N E EP D ++RH P +++EG
Sbjct: 134 AGIVGLGGAAFPTAVK----TDPGHRAIDTLILNGAECEPYITCDDSLLRHFPREVLEGA 189
Query: 524 LIAGRAMGAQAAYIYIRGE 580
I R +G + + I +
Sbjct: 190 RILMRVLGVERCLLGIEDD 208
>UniRef50_A1WUZ0 Cluster: Electron transport complex, RnfABCDGE
type, C subunit precursor; n=10;
Gammaproteobacteria|Rep: Electron transport complex,
RnfABCDGE type, C subunit precursor - Halorhodospira
halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 681
Score = 44.4 bits (100), Expect = 0.004
Identities = 40/153 (26%), Positives = 66/153 (43%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ + +G+RG GGA FP+ +K + + LVVN E + D ++R
Sbjct: 315 LLRRIGEAGVRGMGGAAFPSALK---LADGARSGVDTLVVNGVECDTYLTCDETLLRMRA 371
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
+++G IA RA GA+ + ++ A+ + AI EA +A DI
Sbjct: 372 AAIIDGARIAARACGAERILVAVKNSAPEAAAAAEAAI-EASEA--------------DI 416
Query: 683 FVHRGAGAYICGEETALIESIEGKQGKPRLKPP 781
V R G Y G E ++ G+ +PP
Sbjct: 417 QVVRVGGDYPAGNERHIVYPTTGRTVPAGARPP 449
>UniRef50_Q9KT88 Cluster: Electron transport complex protein rnfC;
n=82; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Vibrio cholerae
Length = 774
Score = 44.4 bits (100), Expect = 0.004
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = +2
Query: 335 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 514
++ +G+ G GGAGFPT K + R + L++NA E EP D +MR H+++
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQYAHEII 195
Query: 515 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 613
+G I + + I I + LQ A
Sbjct: 196 QGIEIVEHILKPKLTIIGIEDNKPEAVAALQQA 228
>UniRef50_A6TUS7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=5; Clostridiales|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Alkaliphilus metalliredigens QYMF
Length = 445
Score = 44.0 bits (99), Expect = 0.005
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = +2
Query: 329 NEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHK 508
+++K +G+ G GGAGFPT +K D + +++++N E EP D+++M + P +
Sbjct: 5 DQIKEAGVIGAGGAGFPTHVK-------LDAKAEFVLLNGAECEPLLRVDQQLMEYFPEE 57
Query: 509 LVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
+++G A + + + A I I+ + L+ I E
Sbjct: 58 VIKGLEKARQHVKGKKALIGIKEKHTKVIDKLERKIKE 95
>UniRef50_Q52716 Cluster: Electron transport complex protein rnfC;
n=4; Rhodobacter|Rep: Electron transport complex protein
rnfC - Rhodobacter capsulatus (Rhodopseudomonas
capsulata)
Length = 519
Score = 44.0 bits (99), Expect = 0.005
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHD 499
I ++ +G+ G GGA FP+ +K +N + L++N E EP TC DR +MR
Sbjct: 138 IAAQVAAAGIVGMGGATFPSAVK---LNLRAKYDLTTLIINGAECEPYLTCDDR-LMRER 193
Query: 500 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFD 679
++ +G I RA+G + ++ I SN AI EA + + + GY F
Sbjct: 194 AEEIADGIGIMARALGVKQVFVAIE-------SNKPQAI-EA-----MTRYNRALGYTFK 240
Query: 680 IFVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGL 802
I H Y G E L++ I G++ R AD+G+
Sbjct: 241 I--HVVPTQYPMGSEKHLVKMITGQETPAR---ALTADLGV 276
>UniRef50_Q1FMT5 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Clostridiales|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Clostridium phytofermentans ISDg
Length = 442
Score = 43.2 bits (97), Expect = 0.008
Identities = 29/99 (29%), Positives = 52/99 (52%)
Frame = +2
Query: 335 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 514
+K G+ G GGAGFPT K F NK +++N E EP R+++R ++++
Sbjct: 11 VKEYGICGAGGAGFPTYAK--FSNKVDT-----IILNCAECEPLLKLHRQLLRDRAYEVL 63
Query: 515 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQ 631
+ I ++GA+ A I ++ + N + ++ I AY+
Sbjct: 64 KAFSIIAESIGAKEAIIVVKPSYKNTIAAVEAEIG-AYK 101
>UniRef50_Q1ZEG2 Cluster: Electron transport complex protein RnfC;
n=1; Psychromonas sp. CNPT3|Rep: Electron transport
complex protein RnfC - Psychromonas sp. CNPT3
Length = 839
Score = 42.7 bits (96), Expect = 0.011
Identities = 39/150 (26%), Positives = 68/150 (45%)
Frame = +2
Query: 308 KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 487
+ + ++++E++ +G+ G GGAGFPT +K + L++NA E EP D +
Sbjct: 138 QSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEATQLLLINAAECEPYISADDRL 192
Query: 488 MRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSG 667
M+ ++++ G + + + I I N+ ++ A+ EA KN
Sbjct: 193 MQEHANEIIAGINVLQHILNPKLTIIAIED---NKPQAIE-ALTEALNT---TKN----- 240
Query: 668 YDFDIFVHRGAGAYICGEETALIESIEGKQ 757
I + + Y G E LIE I GKQ
Sbjct: 241 ---HIIIRKIPTLYPSGSEKQLIEIITGKQ 267
>UniRef50_A6FIW1 Cluster: Electron transport complex protein RnfC;
n=1; Moritella sp. PE36|Rep: Electron transport complex
protein RnfC - Moritella sp. PE36
Length = 931
Score = 42.3 bits (95), Expect = 0.015
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +2
Query: 314 TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPGTCKDREIM 490
T + + +G+ G GGAGFPT +K +D +P ++L++NA E EP D +M
Sbjct: 133 TSELQQHISQAGVAGMGGAGFPTAVKL------NDRQPIEFLLINAAECEPYITSDDVLM 186
Query: 491 RHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 616
R +++G I + I I + A L+ AI
Sbjct: 187 RERADDIIQGIEILRHMIKPALCVIGIEDNKPDAAQALETAI 228
>UniRef50_A4B3H4 Cluster: Electron transport complex protein RnfC;
n=1; Alteromonas macleodii 'Deep ecotype'|Rep: Electron
transport complex protein RnfC - Alteromonas macleodii
'Deep ecotype'
Length = 852
Score = 42.3 bits (95), Expect = 0.015
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ + +G+ G GGAGFPT +K S +KP + +L++N E EP D +MR
Sbjct: 140 LIEAICQAGISGMGGAGFPTHIKTS-TSKPVE----FLILNGIECEPYITSDDRLMREHA 194
Query: 503 HKLVEGCLIAGRAMGAQAAYIYI 571
++ +G I +G +A + +
Sbjct: 195 WQIRQGLDILTHLIGPKAIIVAV 217
>UniRef50_Q1EUM7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Clostridium oremlandii
OhILAs|Rep: Respiratory-chain NADH dehydrogenase domain,
51 kDa subunit - Clostridium oremlandii OhILAs
Length = 388
Score = 41.9 bits (94), Expect = 0.020
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +2
Query: 299 ILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD 478
+++K TD + +K +G+ G GGAGFPT +K D Y++VNA E EP +
Sbjct: 70 MMIKATDNYLEAIKEAGVVGAGGAGFPTHIKLDV-----DLTGGYVIVNAAECEPVLNHN 124
Query: 479 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 574
+ P ++ G A YI I+
Sbjct: 125 MLAIEKQPDLILRGLKYVMEITKAAKGYIAIK 156
>UniRef50_Q02B56 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit precursor; n=1; Solibacter
usitatus Ellin6076|Rep: Respiratory-chain NADH
dehydrogenase domain, 51 kDa subunit precursor -
Solibacter usitatus (strain Ellin6076)
Length = 436
Score = 41.9 bits (94), Expect = 0.020
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 332 EMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKL 511
+++ G+ G GGAGFPT +K + + ++++ N E EP KD E+M+H +
Sbjct: 5 KLREFGVVGAGGAGFPTYVK-------AQSQVEFMIANGAECEPLIHKDAELMKHFAPGI 57
Query: 512 VEGCLIAGRAMGAQ 553
++G A GAQ
Sbjct: 58 LDGMTSMMSATGAQ 71
>UniRef50_A6NT39 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 454
Score = 41.9 bits (94), Expect = 0.020
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ ++ SGL G GGAGFPT W +N D LV+N E EP D MR
Sbjct: 143 LLDAVRKSGLVGLGGAGFPT---WVKLNATVD----RLVINGSECEPYCTVDYIAMRDYA 195
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIR 574
+ EG I +G + A + ++
Sbjct: 196 ADMAEGVRIVKTLLGIEKAIVGVK 219
>UniRef50_A3DI53 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Clostridium thermocellum ATCC
27405|Rep: Electron transport complex, RnfABCDGE type, C
subunit - Clostridium thermocellum (strain ATCC 27405 /
DSM 1237)
Length = 439
Score = 41.9 bits (94), Expect = 0.020
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD-REIMRHDP 502
++ ++ SGL G GGAGFP +K ++ P D + L++NA E EP D REI+ +
Sbjct: 123 ISAIRESGLVGLGGAGFPAHVK---LSPPPDKKIDTLIINAAECEPYITSDYREIIENS- 178
Query: 503 HKLVEGCLIAGRAMGAQAAYIYI 571
+V G I +G + I I
Sbjct: 179 WNVVSGINIIMEILGIENVLIGI 201
>UniRef50_A1U014 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Gammaproteobacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
(strain DSM 11845))
Length = 449
Score = 41.9 bits (94), Expect = 0.020
Identities = 25/95 (26%), Positives = 48/95 (50%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+V +++ +G+ G GGAGFP+ +K R L+ N E EP KD+ +++
Sbjct: 10 LVEKVRNAGVVGAGGAGFPSYVK-------IQARADVLIANGAECEPLLYKDQTVIQRFS 62
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 607
+L++G + GA I I+ + + S+++
Sbjct: 63 AELLQGMALLMEQTGASRGVIAIKEKHQDSISHIE 97
>UniRef50_A5N7M5 Cluster: RnfC; n=1; Clostridium kluyveri DSM
555|Rep: RnfC - Clostridium kluyveri DSM 555
Length = 452
Score = 41.1 bits (92), Expect = 0.034
Identities = 22/83 (26%), Positives = 45/83 (54%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I++ ++ +G+ G GGA FP+ +K ++ P+D + ++ ++N E EP D M
Sbjct: 124 IMSIIREAGIVGMGGATFPSHVK---LSPPADKKVEFFILNGAECEPYLTSDYRSMLEYT 180
Query: 503 HKLVEGCLIAGRAMGAQAAYIYI 571
++V G I + + A+ ++ I
Sbjct: 181 DRIVSGVKIIMKILKAEQGFVGI 203
>UniRef50_A5EVI2 Cluster: Electron transport complex protein, C
subunit; n=1; Dichelobacter nodosus VCS1703A|Rep:
Electron transport complex protein, C subunit -
Dichelobacter nodosus (strain VCS1703A)
Length = 535
Score = 41.1 bits (92), Expect = 0.034
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 347 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHDPHKLVEGC 523
G+ G GGAGFPT K + K+LV+NA E EP +C D +I H ++V G
Sbjct: 144 GVVGLGGAGFPTARKLAL-------AAKHLVINAAECEPYISCDDMQIREH-AAQIVRGA 195
Query: 524 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
++ + + I + + L+ AIA+A
Sbjct: 196 QLSAYILSVDSIRFGIENDKPQAIAALEKAIADA 229
>UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subunit;
n=1; Haloarcula marismortui|Rep: Putative NADH
dehydrogenase I, F subunit - Haloarcula marismortui
(Halobacterium marismortui)
Length = 507
Score = 41.1 bits (92), Expect = 0.034
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Frame = +2
Query: 353 RGRGGAGF--PTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 526
RGRG A P W ++ +DG P +V NA++ D ++ P +++G
Sbjct: 155 RGRGDAAADEPVADTWETASE-TDGDP-VVVCNANDASDLPTGDDTLLSGAPMAVLDGIA 212
Query: 527 IAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGA 706
+ A A +Y+ + ++L+ AI A + G
Sbjct: 213 AVAEYVDAGDAVVYVNESQTDVQADLREAIDAAADTLPVVPQLVA-----------GPDE 261
Query: 707 YICGEETALIESIEGKQG-KPRLKPPFPADVGLF 805
+ GE TA +E++EG +PRL+PP PA GL+
Sbjct: 262 FRAGEPTAALEALEGADRIEPRLQPPSPAKRGLY 295
>UniRef50_A7B0F4 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 457
Score = 40.7 bits (91), Expect = 0.045
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +2
Query: 335 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 514
++ +G+ G GGAGFPT K D R + +++N E EP R+++ ++V
Sbjct: 19 LQQNGIVGAGGAGFPTYAK-------LDQRAETIILNCAECEPLLRLHRQLLEKYAREIV 71
Query: 515 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
+ + G+A+GA+ I I+ + ++ I E
Sbjct: 72 DTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVIGE 107
>UniRef50_Q9XDM9 Cluster: Propanediol utilization protein; n=15;
Enterobacteriaceae|Rep: Propanediol utilization protein
- Salmonella typhimurium
Length = 451
Score = 40.3 bits (90), Expect = 0.060
Identities = 27/89 (30%), Positives = 44/89 (49%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 496
D I ++ +G+ G GGAGFP +K + + +VNA E EP D+++M
Sbjct: 15 DEIRERVRAAGVVGAGGAGFPAHVK-------LQAQVEIFLVNAAECEPMLKVDQQLMWQ 67
Query: 497 DPHKLVEGCLIAGRAMGAQAAYIYIRGEF 583
+LV G A A GA+ I ++ ++
Sbjct: 68 QAARLVRGVQYAMTATGAREGVIALKEKY 96
>UniRef50_Q2BP71 Cluster: Electron transport complex protein RnfC;
n=5; Gammaproteobacteria|Rep: Electron transport complex
protein RnfC - Neptuniibacter caesariensis
Length = 1047
Score = 40.3 bits (90), Expect = 0.060
Identities = 28/101 (27%), Positives = 47/101 (46%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ ++ G+ G GGAGFPT +K ++ D LV+NA E EP D +MR
Sbjct: 127 LLDFIRFRGISGMGGAGFPTDVK---LHLGDDHIVNTLVINAMECEPYITADDMLMREHA 183
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
++V+G I + I ++ A+AE+
Sbjct: 184 DQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAES 224
>UniRef50_Q9CNP2 Cluster: Electron transport complex protein rnfC;
n=21; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Pasteurella multocida
Length = 835
Score = 39.9 bits (89), Expect = 0.079
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 296 EILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TC 472
+ L + + ++ ++ +G+ G GGA FPT K K + K L++N E EP TC
Sbjct: 126 DFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEK----QVKLLIINGAECEPYITC 181
Query: 473 KDREIMRHDPHKLVEGCLI 529
DR +MR +++EG I
Sbjct: 182 DDR-LMRDYADEIIEGTRI 199
>UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=1;
Psychroflexus torquis ATCC 700755|Rep: Formate
dehydrogenase, beta subunit - Psychroflexus torquis ATCC
700755
Length = 243
Score = 39.5 bits (88), Expect = 0.10
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNK 409
D ++ +++ S L+G GGAGFPTG KW + +
Sbjct: 212 DSVLTQLENSALKGLGGAGFPTGKKWRIVKQ 242
>UniRef50_A7GJH3 Cluster: Respiratory-chain NADH dehydrogenase
family protein; n=16; Clostridiaceae|Rep:
Respiratory-chain NADH dehydrogenase family protein -
Clostridium botulinum (strain Langeland / NCTC 10281 /
Type F)
Length = 428
Score = 39.5 bits (88), Expect = 0.10
Identities = 29/108 (26%), Positives = 56/108 (51%)
Frame = +2
Query: 302 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 481
LL+ ++ I++ ++ +G+ G GGAGFPT +K M+ +G ++ NA E EP +
Sbjct: 73 LLESSNNILDLIQAAGIVGMGGAGFPTHIK---MDVNLNG--GVVIANAVECEPLLAHNI 127
Query: 482 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
+ ++P + +G A A+ A I+ + S+L+ I ++
Sbjct: 128 NQIINEPELIYKGLCYAMEAVNASKGVFAIKSKNVEAISSLKNVIKDS 175
>UniRef50_A1WTR7 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Halorhodospira halophila SL1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 506
Score = 39.5 bits (88), Expect = 0.10
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 344 SGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPG-TCKDREIMRHDPHKLVE 517
+G+ G GGA FP +K G+P L++N E EP TC DR +MR +++
Sbjct: 139 AGIVGMGGAAFPAAVKLGA------GQPVATLILNGGECEPYLTCDDR-LMRERAAGIID 191
Query: 518 GCLIAGRAMGAQAAYI 565
G + RA+GA+ I
Sbjct: 192 GAQLMARALGAERTAI 207
>UniRef50_A1SSX3 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Psychromonas ingrahamii 37|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Psychromonas ingrahamii (strain 37)
Length = 857
Score = 39.5 bits (88), Expect = 0.10
Identities = 39/145 (26%), Positives = 64/145 (44%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ ++ SG+ G GG GFP+ +K S + K L++NA E EP D +M+
Sbjct: 142 LIDLIQQSGIIGMGGGGFPSHLKLS-----NAHNVKLLIINAIECEPYITADDRLMQEHA 196
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 682
+L+ G I + I + + +AI +A ++ + KN +
Sbjct: 197 DQLITGIEILQHILKPTLTIFAIEDNKPQAIAAINLAIKQAPES--LQKN---------L 245
Query: 683 FVHRGAGAYICGEETALIESIEGKQ 757
V A Y G E LIE I G+Q
Sbjct: 246 RVSIIATRYPSGGEKQLIEMITGQQ 270
>UniRef50_Q5P537 Cluster: Electron transport complex protein rnfC;
n=10; Proteobacteria|Rep: Electron transport complex
protein rnfC - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 508
Score = 39.1 bits (87), Expect = 0.14
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I + +G+ G GGA FP+ +K ++ + L++N E EP D +MR
Sbjct: 133 IGRRVSAAGIVGLGGAAFPSAVK---LSGGREANVDLLIINGGECEPFLSCDDRLMRERA 189
Query: 503 HKLVEGCLIAGRAMGAQAAYIYI 571
++G I A GA+ A I I
Sbjct: 190 ADAIDGVAIMLHATGAREARIGI 212
>UniRef50_Q5NLH4 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=1; Zymomonas mobilis|Rep: NADH:ubiquinone
oxidoreductase subunit - Zymomonas mobilis
Length = 487
Score = 39.1 bits (87), Expect = 0.14
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +2
Query: 344 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 523
+G+ G GGA FP +K + + S K +V+N E EP D +M+ +++ G
Sbjct: 134 AGVVGLGGAAFPAAVK---LEQSSQKPIKMVVLNGAECEPYLTGDDRVMQEYADEVISGG 190
Query: 524 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAY 628
+ A+GA I I EA + AEAY
Sbjct: 191 RLIAHAVGAPKVVIGIERN-KPEALAIMKKTAEAY 224
>UniRef50_Q15RL3 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Proteobacteria|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 890
Score = 38.7 bits (86), Expect = 0.18
Identities = 25/103 (24%), Positives = 48/103 (46%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ + +G+ G GGAGFPT +K + P +++++N E EP D +MR
Sbjct: 144 VLEAICNAGISGMGGAGFPTHIKAA----PKKD-VEFIIINGVECEPYITSDDRLMREHA 198
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQ 631
++ +G + + + YI I ++VA ++ Q
Sbjct: 199 WQIRQGIDVLCHLLSPKQVYIAIEDNKPEAIEAMRVACQQSEQ 241
>UniRef50_A6PDB0 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Shewanella sediminis HAW-EB3|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Shewanella sediminis HAW-EB3
Length = 842
Score = 38.7 bits (86), Expect = 0.18
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I+ +++ +G+ G GGA FPT +K +N SD + L++NA E EP D +MR
Sbjct: 139 ILRKIQDAGIAGLGGAAFPTHIK---LNPASD--IELLIINAIECEPYITADDMLMREHS 193
Query: 503 HKLVEGCLIAGRAM 544
+ G I R +
Sbjct: 194 DAICLGIAIIHRLL 207
>UniRef50_A6BIN7 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 471
Score = 38.7 bits (86), Expect = 0.18
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Frame = +2
Query: 335 MKTSGLRGRGGAGFPTGMKWSF-MNKPSDGR---------PK-------YLVVNADEGEP 463
+K +G+ G GGAGFPTG+K + + + G PK Y++VNA E EP
Sbjct: 90 VKAAGIVGMGGAGFPTGVKLNINLEETPMGELDPEINPELPKDFKLDCGYILVNAAECEP 149
Query: 464 GTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 616
G + + KL+ G + A+ A I I+ + + LQ A+
Sbjct: 150 GLEHNTRQIEEQSDKLIRGIKYSMEITHAKKAIIAIKKKHHKAIKVLQKAL 200
>UniRef50_Q3A7W8 Cluster: Predicted NADH:ubiquinone oxidoreductase,
subunit RnfC; n=1; Pelobacter carbinolicus DSM 2380|Rep:
Predicted NADH:ubiquinone oxidoreductase, subunit RnfC -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 437
Score = 37.9 bits (84), Expect = 0.32
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ ++ +G+ G GGA FP+ +K ++ P D ++VNA E EP DR +
Sbjct: 124 MLDRIREAGVVGMGGAAFPSHVK---LDPPRDKTIDTVIVNAVECEPWLTADRRTLLERM 180
Query: 503 HKLVEGCLIAGRAMGAQAAYI 565
K++ G + + A +I
Sbjct: 181 EKVLTGIEVLQKITDADHVWI 201
>UniRef50_Q2NSZ7 Cluster: Putative iron-sulfur binding NADH
dehydrogenase; n=1; Sodalis glossinidius str.
'morsitans'|Rep: Putative iron-sulfur binding NADH
dehydrogenase - Sodalis glossinidius (strain morsitans)
Length = 663
Score = 37.9 bits (84), Expect = 0.32
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
+++ + SG+ G GGAGFPT K + + L++N E EP D +MR
Sbjct: 135 LLSRIHESGIAGLGGAGFPTAAKLG----GGEHGVETLIINGAECEPYITADDRLMREHA 190
Query: 503 HKLVEGCLI 529
+V G I
Sbjct: 191 RDIVTGMAI 199
>UniRef50_Q1N6T4 Cluster: Electron transport complex protein RnfC;
n=1; Oceanobacter sp. RED65|Rep: Electron transport
complex protein RnfC - Oceanobacter sp. RED65
Length = 727
Score = 37.9 bits (84), Expect = 0.32
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +2
Query: 317 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 496
D +++ ++ SG+ G GGA FPT +K P + R L++NA E EP D +MR
Sbjct: 129 DTLIDIIQQSGITGLGGASFPTHVKTCV---PEE-RIDTLILNAAECEPYITADDMLMRS 184
Query: 497 DPHKLVEG 520
LV+G
Sbjct: 185 YADGLVKG 192
>UniRef50_Q9HYB8 Cluster: Electron transport complex protein rnfC;
n=12; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Pseudomonas aeruginosa
Length = 774
Score = 37.5 bits (83), Expect = 0.42
Identities = 27/100 (27%), Positives = 48/100 (48%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ ++ +G+ G GGAGFPT K +P++ + LVVN E EP D +MR
Sbjct: 127 LLERIRAAGIGGLGGAGFPTAAK--LAARPAE-KIHTLVVNGAECEPYISADDLLMRERA 183
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
+++ G I + + + + I + + L A+ E
Sbjct: 184 TQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGE 223
>UniRef50_Q89AW8 Cluster: Electron transport complex protein rnfC;
n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
Electron transport complex protein rnfC - Buchnera
aphidicola subsp. Baizongia pistaciae
Length = 505
Score = 37.5 bits (83), Expect = 0.42
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++N + SG+ G G+GF T K + G+ LVVNA E EP D ++++
Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKLQC----AVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203
Query: 503 HKLVEGCLI 529
++++GC I
Sbjct: 204 KEIIDGCKI 212
>UniRef50_A7QGL6 Cluster: Chromosome chr12 scaffold_93, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr12 scaffold_93, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 322
Score = 37.1 bits (82), Expect = 0.56
Identities = 26/98 (26%), Positives = 46/98 (46%)
Frame = -3
Query: 499 VVTHNLPVFTSTRFTLISIHHEIFWTAI*WLVHE*PLHSCWKTCSSPASKARCFHFINDP 320
V+T L V FT ISI ++I AI + +E + WKT ++ +++ R HF P
Sbjct: 185 VLTWALRVLYIFSFTFISIDNKIGRMAIGYFWNEGSFDARWKTNTTTSTETRFLHFTYYP 244
Query: 319 VGSFQ*NLLRQIPVPSGESTLQPPFMSTIQVCENPIAI 206
+ + + + +P T + M I + E+ + I
Sbjct: 245 IRTLEYYVSGLVPSTHFHGTFKKWVMQPINIGEDAVLI 282
>UniRef50_Q5FP48 Cluster: Outer membrane protein; n=2; Gluconobacter
oxydans|Rep: Outer membrane protein - Gluconobacter
oxydans (Gluconobacter suboxydans)
Length = 518
Score = 36.3 bits (80), Expect = 0.97
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -1
Query: 375 KPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRP-YKFVKTRSLSAS 199
+P P LPR PD S+ + + P +++ +Y + AR + + P + T + +AS
Sbjct: 294 RPIPDLPRFPDSLPSIVLANRPDIRVAEAEYAADTARVGIAVSNLYPKFMIPLTFNPNAS 353
Query: 198 GPYLSFEGAWVCW 160
Y +F+ + W
Sbjct: 354 AAYQAFQAGGMAW 366
>UniRef50_Q1AWR7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Rubrobacter xylanophilus
DSM 9941|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 388
Score = 36.3 bits (80), Expect = 0.97
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 293 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPGT 469
+E+ + V+ M+ +G+ G GG GFPT K+ RP +L+VNA E EPG
Sbjct: 10 EEVKALSREEAVDIMQHAGIVGAGGGGFPTYFKYK--------RPLPHLIVNATESEPGY 61
Query: 470 CKDR 481
D+
Sbjct: 62 WGDK 65
>UniRef50_A0L5G6 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Magnetococcus sp. MC-1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Magnetococcus sp. (strain MC-1)
Length = 605
Score = 36.3 bits (80), Expect = 0.97
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
I + ++ +G+ G GGA FP+ +K ++ P + + + LV+N E EP D +M
Sbjct: 132 IRDAVRHAGIVGLGGATFPSHVK---LSPPGEKKVELLVLNGVECEPYLTCDARLMEERS 188
Query: 503 HKLVEGCLIAGRAMGAQAAYIYI 571
+V G I A+ + A I I
Sbjct: 189 GLIVTGVRIMLHALHCKEAVIGI 211
>UniRef50_Q30W86 Cluster: Electron transfer protein; n=1;
Desulfovibrio desulfuricans G20|Rep: Electron transfer
protein - Desulfovibrio desulfuricans (strain G20)
Length = 442
Score = 35.5 bits (78), Expect = 1.7
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +2
Query: 314 TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMR 493
T V ++++G+ G GGAG PT +K +D ++VN EP D +++
Sbjct: 2 TGQTVECIRSAGVVGAGGAGLPTHIK-------ADASVDTVLVNGASCEPLLMSDPYLIQ 54
Query: 494 HDPHKLVEGCLIAGRAMGAQAAYIYIRGE 580
P ++ G L GA+ I ++G+
Sbjct: 55 AHPDIVIRGLLAVMDCTGARRGIICLKGK 83
>UniRef50_Q3YL96 Cluster: CdiA; n=3; Escherichia coli|Rep: CdiA -
Escherichia coli
Length = 3132
Score = 35.1 bits (77), Expect = 2.2
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +2
Query: 314 TDWIVNEMKTSGLRGRGGAGFPTG 385
T W E KTSGL G GG GF TG
Sbjct: 2182 TSWRFKETKTSGLTGTGGIGFTTG 2205
>UniRef50_A4RAI3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 916
Score = 34.7 bits (76), Expect = 3.0
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -1
Query: 525 RHPSTSLWGS*RIISLSLQVPGSPSSAFTTRYFGRPSDGLFMNDHFIPVGKPAP-PLPRR 349
R PS+ +W L++ V S S T + + G ++D F+ P P P R
Sbjct: 54 RWPSSYVWTKAEERLLTICVVPSAGSLNPTEE--KRAAGTHLDDFFVTTTIPLPLPHARH 111
Query: 348 PDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRPYKFVKTRSLSASGP 193
P ++L I S+ + ++ + Y P R+P + P + S++ GP
Sbjct: 112 PTTVVALFIPSIRGTSVAGMPYTPPTHRSPASSQPSSP-DASRRSSIAGGGP 162
>UniRef50_Q0HIH8 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=16; Shewanella|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Shewanella sp. (strain MR-4)
Length = 809
Score = 34.3 bits (75), Expect = 3.9
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ ++ +G+ G GGA FP+ +K +N S+ + +++N E EP D +MR
Sbjct: 133 MIAKIHGAGIAGMGGAAFPSHIK---LNPVSE--IELVIINGVECEPYISADDRLMREYS 187
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 625
++ G I R + + I I +Q A++++
Sbjct: 188 QDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQS 228
>UniRef50_Q0F0I1 Cluster: Electron transport complex protein RnfC;
n=1; Mariprofundus ferrooxydans PV-1|Rep: Electron
transport complex protein RnfC - Mariprofundus
ferrooxydans PV-1
Length = 521
Score = 34.3 bits (75), Expect = 3.9
Identities = 31/114 (27%), Positives = 49/114 (42%)
Frame = +2
Query: 278 DWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEG 457
DW T LL+ + GL G GGA FPT +K + + S + +V+N E
Sbjct: 130 DWRNTDPALLR------ERARMCGLAGLGGAVFPTFIK---LVQDSRFPIETVVLNGIEC 180
Query: 458 EPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 619
EP D +M +++ G I + +A I I + A ++ A+A
Sbjct: 181 EPWLTTDHRLMLEYADEILTGLAIIMHMVNTDSAIIAIEDNKSDAAEAIEQALA 234
>UniRef50_A6VVJ2 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Marinomonas|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Marinomonas sp. MWYL1
Length = 981
Score = 34.3 bits (75), Expect = 3.9
Identities = 44/152 (28%), Positives = 64/152 (42%)
Frame = +2
Query: 347 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 526
G+ G GGAGFPT +K +K + ++NA E EP D ++R +LV G
Sbjct: 137 GIIGMGGAGFPTQVKLQGAHK---NPLTHFIINAAECEPYITADDMLIREKTLELVLGIE 193
Query: 527 IAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGA 706
+ + A I I N AIA A + L +NS I +
Sbjct: 194 MLQHLVEADNVIIGIE-------DNKPTAIA-ALKTVLTQRNS-------KIQIAVVPTK 238
Query: 707 YICGEETALIESIEGKQGKPRLKPPFPADVGL 802
Y G E LI+ + GK+ +PAD+G+
Sbjct: 239 YPSGGEKQLIQLLTGKEVP---SGQYPADIGV 267
>UniRef50_A1HJR3 Cluster: Putative uncharacterized protein; n=1;
Ralstonia pickettii 12J|Rep: Putative uncharacterized
protein - Ralstonia pickettii 12J
Length = 364
Score = 34.3 bits (75), Expect = 3.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 626 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIESI 745
+QAG++ G+G FD F+ RG A + E AL + +
Sbjct: 84 HQAGVVADGGFGAGEQFDRFIQRGLAAQVAHERRALDDGV 123
>UniRef50_P57215 Cluster: Electron transport complex protein rnfC;
n=1; Buchnera aphidicola (Acyrthosiphon pisum)|Rep:
Electron transport complex protein rnfC - Buchnera
aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon
pisumsymbiotic bacterium)
Length = 473
Score = 34.3 bits (75), Expect = 3.9
Identities = 26/95 (27%), Positives = 42/95 (44%)
Frame = +2
Query: 323 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 502
++ + SG+ G GG FP+ K F S R L+VNA E EP D ++ +
Sbjct: 95 LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150
Query: 503 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 607
+++ GC I + I I+ + S +Q
Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQ 185
>UniRef50_Q82NN9 Cluster: Putative uncharacterized protein; n=1;
Streptomyces avermitilis|Rep: Putative uncharacterized
protein - Streptomyces avermitilis
Length = 170
Score = 33.9 bits (74), Expect = 5.2
Identities = 28/100 (28%), Positives = 44/100 (44%)
Frame = +2
Query: 50 SARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTN 229
S +A LT G + L + VP+ Q + P++D PL + RV
Sbjct: 54 SPGELAADLTVACDGRDSSVRRAAGLEPSYFEVPMDVWQVRVPARD---PLKEG-RVSLT 109
Query: 230 LYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSG 349
+ + + L RGD+Y T ++ KGTD + M +SG
Sbjct: 110 V---RDGQFAATLDRGDYYQTSYLIKKGTDGALRPMASSG 146
>UniRef50_A6M0M4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Clostridium beijerinckii
NCIMB 8052|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Clostridium beijerinckii NCIMB
8052
Length = 441
Score = 33.9 bits (74), Expect = 5.2
Identities = 23/99 (23%), Positives = 48/99 (48%)
Frame = +2
Query: 326 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 505
++ +K +G+ G GGAGFPT +K + + K ++VN E EP D+++M
Sbjct: 6 IDLIKDAGIIGAGGAGFPTHVK-------LNAKVKTVIVNGAECEPLLKVDQQLMDKKAD 58
Query: 506 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 622
+++ ++ I ++G++ + + L I +
Sbjct: 59 EILYALNKVVDETESEVGIIALKGKYKSAINTLNSKIKD 97
>UniRef50_A0JX02 Cluster: Peptidase S9, prolyl oligopeptidase active
site domain protein; n=3; Micrococcineae|Rep: Peptidase
S9, prolyl oligopeptidase active site domain protein -
Arthrobacter sp. (strain FB24)
Length = 701
Score = 33.9 bits (74), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 341 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEP 463
T G R A P G+ +F+ +DG+P+ VV A GEP
Sbjct: 72 TRGFRDTAPAFSPDGLVLAFLRATADGKPQLYVVEAAGGEP 112
>UniRef50_Q6LTT0 Cluster: Hypothetical type I
restriction-modification system specificity determinant;
n=1; Photobacterium profundum|Rep: Hypothetical type I
restriction-modification system specificity determinant
- Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 437
Score = 33.5 bits (73), Expect = 6.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 179 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKE 298
S K G L D +TN YG EW +G GD LT+E
Sbjct: 272 SNVKQGKLVIEDAKYTNEYGYKEWTSRGVPFPGDILLTRE 311
>UniRef50_A0E8Q4 Cluster: Chromosome undetermined scaffold_83, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_83,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 2513
Score = 33.5 bits (73), Expect = 6.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 751 ALNGLNESCLLTTDVCAGTAVYEYIKVITR 662
A+NG+ +SC L D+C GT +Y+ + T+
Sbjct: 736 AVNGICQSCALNCDICVGTNIYDCTQCSTQ 765
>UniRef50_Q9VEK2 Cluster: CG5866-PA; n=1; Drosophila
melanogaster|Rep: CG5866-PA - Drosophila melanogaster
(Fruit fly)
Length = 206
Score = 33.1 bits (72), Expect = 9.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 476 LYKYQVHPHQHSPRDILDGH 417
LY++Q HPH+H P L+GH
Sbjct: 68 LYQFQSHPHEHGPHYHLEGH 87
>UniRef50_A4RDW7 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1706
Score = 33.1 bits (72), Expect = 9.1
Identities = 24/86 (27%), Positives = 33/86 (38%)
Frame = -1
Query: 468 VPGSPSSAFTTRYFGRPSDGLFMNDHFIPVGKPAPPLPRRPDVFISLTIQSVPFSKISFV 289
V G P + R R S G + + V P P P PD + SL + P +
Sbjct: 1409 VTGYPPKIYGRRQDHRASGGPHQYPYILSVQPPQAPYPPSPDGYTSLPMSRNPSGETQPQ 1468
Query: 288 KYQSPRARAPFNLHSCRPYKFVKTRS 211
K Q ++ AP + P TRS
Sbjct: 1469 KQQ--QSLAPMPVRHTPPVPITSTRS 1492
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,315,194
Number of Sequences: 1657284
Number of extensions: 22343089
Number of successful extensions: 60361
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 57076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60212
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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