Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F05
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 52 1e-07
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 2.6
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 3.4
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 3.4
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 7.9
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 7.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 7.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 7.9
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 52.0 bits (119), Expect = 1e-07
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 7/199 (3%)
Frame = +1
Query: 166 CIGIEHDFKGFDDSISFGINWPGNPNLNENFVDGEKNKSQNQELVKVTTTNKESYECQLP 345
C+ D+ + + W N ++ E +D K K++ +L + K Y C P
Sbjct: 33 CLASLLDWNDAYEYPKYSFEW-SNVSILEGDIDSIKEKTEKTKLSSLFYAGKHEYFCVYP 91
Query: 346 E--LRSTESTSIDDYDGPSPLHLLKPLMNKEMCSYRLES--YWSYEVCHGRYIRRYH-EE 510
L ST+ YD +N+ + +E+ YW+Y+ +G+++R+YH E
Sbjct: 92 NASLIKQNSTTEPSYDLQELRIQGTEKINELANVFLIENRGYWTYDYVYGQHVRQYHLEP 151
Query: 511 REG--KQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDG 684
++G K + Y LG + Q K K +E+ I VEG A ++ +G
Sbjct: 152 QQGSDKVLANPMYILG-TAPNTQTK-----KNLEENWAI---GFVEGKAY--LQTTFRNG 200
Query: 685 TICDLNGKPRLTRVHYVCS 741
T+CD+ +PR + Y CS
Sbjct: 201 TMCDITKRPRHVILSYECS 219
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 1.5
Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
Frame = +1
Query: 175 IEHDFKGFDDSISFGINWPGNPNLNENFVDGEKNKSQNQELV---KVTTTNKESYECQLP 345
+E+ + F+ + ++ P +P+ + + + QEL K++ ++ + +LP
Sbjct: 284 VENQERTFNLTSDVHLDSPTSPSKHSSIEPNTSQEDSFQELPSLNKLSIQSRAFKKMRLP 343
Query: 346 ELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVCHGRYIRRYHEE-REGK 522
++ T T + +L K +++CS LE Y + R +RY + ++ K
Sbjct: 344 KISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRSLEPY-ELDSNTQRKRKRYEDSLKKSK 402
Query: 523 QINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDD 681
++ + + K AK E + K ++E ++I K + + L + ++ D
Sbjct: 403 TLDKVDSL-----NRKMAK-ELDRKNSKELQKINKVKRTKEECLSEIILLSPD 449
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 429 RNVFIQIGKLLEL*SMPWKVYPAVSRRKRGQTNQHPRIFLGIL 557
RN+ + LL S+ W+VY V R T RIFL I+
Sbjct: 502 RNIALFFANLLSTDSIGWEVYDCV-RLTEDDTTASSRIFLKIM 543
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 214 FGINWPGNPNLNENFVDGEKNK-SQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDG 390
FG+ W +ENF+D K K S + +K + LR E T+ + G
Sbjct: 40 FGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQLEENIPVNSAMENLRKVEETAGSFWSG 99
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 257 KFSFKLGLPGQFIPNEMLSSN 195
KF + G P QF+P E L+SN
Sbjct: 158 KFKSEYGYPSQFLPIEKLTSN 178
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 268 EKNKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDY 384
EK + E +KVT +++ + PEL ++ ++D Y
Sbjct: 41 EKEIANEYEALKVTERKEDTQDYNEPELHNSNDPTVDLY 79
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 484 FHGILHSSNSFPICMNTFLC-SSKALEG-EAVMDHR 383
FH + + NS +C+ F S K LEG + HR
Sbjct: 23 FHSVPQNKNSLSVCVAEFTALSEKPLEGFRKISSHR 58
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 268 LHQQNFRLNWDYQANLSQTKCYHRI 194
L ++ F LN+D+ NLS+++ Y+ +
Sbjct: 485 LFREQFLLNFDFTYNLSESEVYNTV 509
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 319 KESYECQLPELRSTESTSIDDYDGPSPLH 405
KES+ +L L+ TEST++ Y PLH
Sbjct: 368 KESFSARLQSLQDTESTNL--YISNLPLH 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,320
Number of Sequences: 5004
Number of extensions: 66568
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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