Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F05
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334... 64 1e-10
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 33 0.39
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867... 32 0.51
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 30 2.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.1
06_01_0772 + 5770502-5770619,5771035-5772335 29 4.7
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672... 28 8.3
>06_03_0916 -
25932934-25933090,25933170-25933276,25933356-25933422,
25933509-25933624,25933873-25933944,25934055-25934255,
25934652-25934728,25935131-25935230
Length = 298
Score = 64.5 bits (150), Expect = 1e-10
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Frame = +1
Query: 259 VDGEKNKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDGPSPL----HLLKP--- 417
VD N QE V +T+ + Y C LP + SI + + + +KP
Sbjct: 53 VDAPFNPENGQESVPMTSHVGKHYTCFLPVEETKTMKSIIPQNATNVIIESERRVKPKDP 112
Query: 418 --LMN--KEMCSYRLESYWSYEVCHGRYIRRYHEEREGKQINTQEYFLG-YWSSEKQAKL 582
L+ K+ C YR E +WSYE C+ IR+ H EG+++ QEY LG Y + A
Sbjct: 113 DELLEILKDQCFYRHEGWWSYEFCYYGKIRQVHV--EGEKV-IQEYVLGEYDADATDAYY 169
Query: 583 EAEMK-AAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHYVCS 741
E + +A E + T+K V L +GT+CDL PR T V +VCS
Sbjct: 170 ENQTSDSADEDDNLIDTSKRYHVHL------YTNGTVCDLTDMPRETEVRFVCS 217
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 32.7 bits (71), Expect = 0.39
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = +1
Query: 244 LNENFVDGEKNKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDGPSPLHLLKPLM 423
++E + DG+ K N L + T KE+ E L+ +S D D + + L+
Sbjct: 337 ISETWEDGQAIKDLNSHLKSLLET-KETIERHRKSLKKRQSDKGDGSDAETSMSEEDVLL 395
Query: 424 NKEMCSYRLESYWSYEVCHGRYIRRYHEER 513
E+C RL S E + R RY E+
Sbjct: 396 QDEICKSRLTSIKREEEQYLRERDRYELEK 425
>02_05_0083 +
25684816-25685383,25685474-25685499,25686325-25686718,
25687726-25687814,25687924-25687980,25688341-25688408,
25688511-25688617,25688698-25688768,25688844-25688912
Length = 482
Score = 32.3 bits (70), Expect = 0.51
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +1
Query: 373 IDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVC---HGRYIRRYHEE-----REGKQI 528
++D + + +K +++KE+ ++ E Y +Y H +++Y+E+ REG Q
Sbjct: 311 LEDISSETNCYPVKVILSKELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFREGNQ- 369
Query: 529 NTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVE 642
EY LG K + A + + S +I K+ KVE
Sbjct: 370 KEVEYLLG---EGKHYYMMARLADEKSSAEIVKSKKVE 404
>10_08_0568 + 18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 322 ESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSY-RLESYWSYEVCHGRYIRR 498
+ Y+ Q+ L S S I D P+P + ++NK++ Y +L + E + ++
Sbjct: 940 QCYQAQISTLASVSSLKILTEDDPTPPNCATNIVNKDLSVYLQLRGALNTEAEREKLRKK 999
Query: 499 YHE-EREGKQINTQEYFLGYWSSEKQAKLEAEMK 597
E +++ ++ + GY Q+K + +MK
Sbjct: 1000 RDEIQKQHDTLSQKMNASGYREKAPQSKQDEDMK 1033
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/110 (27%), Positives = 44/110 (40%)
Frame = +1
Query: 322 ESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVCHGRYIRRY 501
ES E LPE E S+DD + L+ L + S + E E CH +
Sbjct: 296 ESKESDLPETEQAEEASVDDQEA---LNQQPALETNDSLSVKAE-----ETCHQSNVATC 347
Query: 502 HEEREGKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVA 651
E+ T+E + + Q +E EMK A E+ +T + VA
Sbjct: 348 GEKTPEDDATTREPTVDTKEEQNQGSVE-EMKDA-EAVDTEETVQQSSVA 395
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 160 YSCIGIEHDFKGFDDSISFGINWPGNPNLNENFVDG 267
Y C EHD+ G++ +I+ NW P L F G
Sbjct: 377 YICYLSEHDYSGWNGTITPFSNWSALPLLEIGFAGG 412
>03_03_0242 +
15765726-15765965,15766703-15766874,15767056-15767209,
15767287-15767350,15767533-15767640,15767817-15767942,
15768037-15768269,15768565-15768787
Length = 439
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 523 VCPLFLRDTAGYTFHGILHSSNSFPICMNTFLCSSKALEGEAVMDHRNH 377
VC L ++ G + HG + ++ FLCSS L+ EA M+ + H
Sbjct: 384 VCQLVMKPGEGISVHGSIPRNSRVDPWGGPFLCSSCQLKKEA-MEGKQH 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,588,841
Number of Sequences: 37544
Number of extensions: 393357
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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