Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_E24
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    33   0.040
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   8.0  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 339 QPVFVNVPVDESSPDTEFDIKVEQ--NSDIKEEPQDSDD 449
           QP     P  +  PD + D  +E+  + D++EE +D+DD
Sbjct: 25  QPAHAAAPAQDDEPDDDIDALIEELFSEDVQEEQEDNDD 63


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 709 PAMSTXPXKWLRVVNXDHTLKIFEH 783
           P   T P   ++VVN D+ +K+F H
Sbjct: 307 PVAETAPSLVVKVVNQDYEVKVFYH 331


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 179 NFIDCFNLFLSTHKQLTTLICSSCVSRLRDACCFRNLVVNTERKLLE 319
           +F+   +  L TH     + CS  VSR    C    L     +K LE
Sbjct: 38  SFLTKLHKVLQTHSSFVNIPCSLLVSRALAECLSPGLPSGVHKKTLE 84


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 145 IFLRNISVFAFC*TTPAFSVF 83
           IFL  +S  +FC T+ AFSVF
Sbjct: 15  IFLGQLSKSSFCATSRAFSVF 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,632
Number of Sequences: 5004
Number of extensions: 57945
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)