Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_E21
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61945-2|AAB03125.2|  494|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   9.7  

>U61945-2|AAB03125.2|  494|Caenorhabditis elegans Hypothetical
           protein C49C8.4 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 128 LQEVGDEQLREKRKLEGITQAKFGV-KNAVLGFVFGKINSLIDAKTKFVANLDRQNI 295
           ++  GD  ++++R    I +  FG+ KN +   V G++ ++ID+  K + ++D QNI
Sbjct: 112 IESHGDRWIQQRRFALHILR-DFGLGKNLMEEKVLGEVTAMIDSIRKSMEDVDMQNI 167


>U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical
           protein F44A2.2 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 631 PAACWWCV 608
           PAACWWCV
Sbjct: 352 PAACWWCV 359


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 306 LLSSMFCRSRFATNLVFASINELIF 232
           +L+SM+CRS   TNL+   ++ +++
Sbjct: 238 ILASMYCRSHVCTNLITMGLDVVVY 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,067,702
Number of Sequences: 27780
Number of extensions: 114577
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)