Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E13
(787 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF229126-5|AAF43197.1| 421|Homo sapiens acetylcholinesterase co... 35 0.38
BC042075-1|AAH42075.1| 854|Homo sapiens COL22A1 protein protein. 32 2.0
AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII colla... 32 2.0
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 31 3.6
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 3.6
M90464-1|AAA52046.1| 910|Homo sapiens alpha-5 type IV collagen ... 31 3.6
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 31 3.6
BC035387-1|AAH35387.1| 695|Homo sapiens COL4A5 protein protein. 31 3.6
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 31 3.6
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 31 3.6
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 31 3.6
AF293341-1|AAK35009.1| 642|Homo sapiens collagen-like Alzheimer... 30 8.2
AF293340-1|AAK35008.1| 654|Homo sapiens collagen-like Alzheimer... 30 8.2
AC097473-2|AAY40947.1| 317|Homo sapiens unknown protein. 30 8.2
>AF229126-5|AAF43197.1| 421|Homo sapiens acetylcholinesterase
collagen-like tail subunit isoform III protein.
Length = 421
Score = 34.7 bits (76), Expect = 0.38
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G GP PG PG+ P G +P +G P P
Sbjct: 59 PPLFPPPFFRGGRSPGP-PGLPGKTGPKGEKGELGRPGRKGRPGP 102
>BC042075-1|AAH42075.1| 854|Homo sapiens COL22A1 protein protein.
Length = 854
Score = 32.3 bits (70), Expect = 2.0
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -1
Query: 547 PXXGVXXP-NXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXP 398
P GV P S PP GS PG PG P G P RG P
Sbjct: 270 PGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPP 320
>AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII collagen
protein.
Length = 1626
Score = 32.3 bits (70), Expect = 2.0
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -1
Query: 547 PXXGVXXP-NXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXP 398
P GV P S PP GS PG PG P G P RG P
Sbjct: 1042 PGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPP 1092
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5
chain protein.
Length = 1685
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 807 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 850
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5
chain protein.
Length = 1691
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 807 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 850
>M90464-1|AAA52046.1| 910|Homo sapiens alpha-5 type IV collagen
protein.
Length = 910
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 807 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 850
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 726 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 769
>BC035387-1|AAH35387.1| 695|Homo sapiens COL4A5 protein protein.
Length = 695
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 415 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 458
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 807 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 850
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 807 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 850
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.5 bits (68), Expect = 3.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G + GP PG PG P G P +G P P
Sbjct: 807 PGPMGPPGLPGIGVQGP-PGPPGIPGPIGQPGLHGIPGEKGDPGP 850
>AF293341-1|AAK35009.1| 642|Homo sapiens collagen-like Alzheimer
amyloid plaque component precursor type II protein.
Length = 642
Score = 30.3 bits (65), Expect = 8.2
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 517 SXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSPMXKTXP 374
S P G I GP PG PG + P G P +G PM P
Sbjct: 517 SGMPGPQGPSIIGP-PGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGP 563
>AF293340-1|AAK35008.1| 654|Homo sapiens collagen-like Alzheimer
amyloid plaque component precursor type I protein.
Length = 654
Score = 30.3 bits (65), Expect = 8.2
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 517 SXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSPMXKTXP 374
S P G I GP PG PG + P G P +G PM P
Sbjct: 517 SGMPGPQGPSIIGP-PGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGP 563
>AC097473-2|AAY40947.1| 317|Homo sapiens unknown protein.
Length = 317
Score = 30.3 bits (65), Expect = 8.2
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 517 SXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSPMXKTXP 374
S P G I GP PG PG + P G P +G PM P
Sbjct: 192 SGMPGPQGPSIIGP-PGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGP 238
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,252,991
Number of Sequences: 237096
Number of extensions: 1482287
Number of successful extensions: 4568
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4459
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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