Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E13
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 33 0.31
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 32 0.53
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 31 0.93
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 31 0.93
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.2
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 30 2.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.0
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 8.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 8.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 25 8.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 25 8.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 25 9.0
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G+ + GP P P + P G P +G P P
Sbjct: 131 PGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLPGP 175
Score = 28.7 bits (61), Expect = 5.0
Identities = 26/103 (25%), Positives = 27/103 (26%)
Frame = -1
Query: 547 PXXGVXXPNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSPMXKTXPFF 368
P P P G I G PG PG P G P G P P
Sbjct: 199 PQGAPGVPGEKGPTGEPGKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPGKAG--PPGL 256
Query: 367 XXKPWXGFXDXFLGXGGXLGXLWGVGXXXXXVXXEDCPPAXCG 239
P D G G G G + CPP G
Sbjct: 257 PGDPGEKGSDGLPGPHGGTGPR---GPPGQPGSCDHCPPPRTG 296
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G PG PG+ P G KP ++G P P
Sbjct: 163 PGSEGPPGPPGHDGPNGGPGQPGQPGPHGPNGHPGKPGSQGPPGP 207
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = -1
Query: 511 PPXXXGSX-IXGPX--PGXPGENXPXXXAGGFXKPXNRGXP 398
PP GS + GP PG PG + P GG P N G P
Sbjct: 174 PPGPAGSAGVKGPSGNPGAPGTDGPAGNKGGQGPPGNAGAP 214
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 538 GVXXPNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
G P S PP G+ G PG++ AG +P RG P P
Sbjct: 206 GDAPPGPSGPPGRPGAPGQPGKAGSPGQDGSNGDAGVAGEPGQRGPPGP 254
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/73 (30%), Positives = 24/73 (32%)
Frame = +3
Query: 291 PTPQXXPRXPPSPKKXSXNPXQGXXKKNGXVLXXGXGXPRFXGXKXPPAXXXGXFSPGXP 470
P PQ P +P + QG G G P G PP G F P P
Sbjct: 380 PPPQSGPPGAFAPPPSAFGAPQGPGGPGGYG-PPPPGGPGAPGSYGPPQGGPGGFGPPPP 438
Query: 471 GXGPXIXEPXKXG 509
G GP P G
Sbjct: 439 G-GPGAYGPPPTG 450
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = +3
Query: 291 PTPQXXPRXPPSPKKXSXNPXQGXXKKNGXVLXXGXGXPRFXGXKXPPAXXXGXFSPGXP 470
P PQ P PP PK + QG +G + G P G PP SPG
Sbjct: 240 PAPQGYP-GPPGPKGRTGE--QGPPGLDGETIDGEDGSPGLPGPPGPPGPPGLHGSPGSY 296
Query: 471 G 473
G
Sbjct: 297 G 297
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 715 PPPXXGXXXXXXXXPPPXXGGXPP 644
PPP G PPP GG PP
Sbjct: 1468 PPPPRGMNSPMRGMPPPMRGGGPP 1491
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 273 TXXXXQPTPQXXPRXPPSPKKXSXNPXQGXXKKNGXVLXXGX-GXPRFXGXKXPPAXXXG 449
T QP PQ P PP P S G NG G G P G K P
Sbjct: 141 TPPPCQPCPQGPP-GPPGPPGPS-----GDAGSNGNPGSPGQDGQPGAPGNKGPSGQNGN 194
Query: 450 XFSPGXPG 473
+PG PG
Sbjct: 195 PGAPGAPG 202
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/79 (27%), Positives = 26/79 (32%)
Frame = +3
Query: 273 TXXXXQPTPQXXPRXPPSPKKXSXNPXQGXXKKNGXVLXXGXGXPRFXGXKXPPAXXXGX 452
T +P PQ P P P + G G G P+ G PP
Sbjct: 141 TPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPK--GPPGPPGAPGAP 198
Query: 453 FSPGXPGXGPXIXEPXKXG 509
+PG PG P EP G
Sbjct: 199 GTPGEPGV-PAQSEPLIPG 216
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/79 (27%), Positives = 26/79 (32%)
Frame = +3
Query: 273 TXXXXQPTPQXXPRXPPSPKKXSXNPXQGXXKKNGXVLXXGXGXPRFXGXKXPPAXXXGX 452
T +P PQ P P P + G G G P+ G PP
Sbjct: 141 TPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPK--GPPGPPGAPGAP 198
Query: 453 FSPGXPGXGPXIXEPXKXG 509
+PG PG P EP G
Sbjct: 199 GTPGEPGV-PAQSEPLIPG 216
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 24.6 bits (51), Expect(2) = 8.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 715 PPPXXGXXXXXXXXPPPXXGGXPP 644
PPP PPP GG PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPP 753
Score = 21.4 bits (43), Expect(2) = 8.8
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G P PG P GGF +G P P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF-----KGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 24.6 bits (51), Expect(2) = 8.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 715 PPPXXGXXXXXXXXPPPXXGGXPP 644
PPP PPP GG PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPP 753
Score = 21.4 bits (43), Expect(2) = 8.8
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G P PG P GGF +G P P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF-----KGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 24.6 bits (51), Expect(2) = 9.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 715 PPPXXGXXXXXXXXPPPXXGGXPP 644
PPP PPP GG PP
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPP 336
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = -1
Query: 526 PNXSXPPXXXGSXIXGPXPGXPGENXPXXXAGGFXKPXNRGXPSP 392
P PP G P PG P GGF +G P P
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF-----KGGPPP 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,624
Number of Sequences: 27780
Number of extensions: 185397
Number of successful extensions: 859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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