Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E10
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 89 3e-18
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 59 5e-09
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 45 6e-05
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 44 1e-04
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565... 34 0.12
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 31 0.86
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 30 2.6
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454... 29 4.6
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 29 4.6
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 89.4 bits (212), Expect = 3e-18
Identities = 66/174 (37%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Frame = +2
Query: 329 QAKESEEGQESPKENDADSSKIISDVVGSVRNATNYTFDTKNHQWCELTVLFPISFLR-I 505
QAK EE +ES + + DSS ++ + AT D N E + I F + I
Sbjct: 1562 QAKLDEELEESEEGHVLDSSNKGENL--KAKQATARLEDEMNEAEDEKAQV-TIKFKKNI 1618
Query: 506 DLSQALRETAMKSVVH----EIKHIKRA-ITHKDNDIVYLKTEGINILQMFKYNHLLDMN 670
+ T + VH E HI A I + V++K G+N K LD+N
Sbjct: 1619 KWTIHYESTGLNFEVHYALQEQPHILLAQIAQRTARSVFVKASGVNFEVFHKLVDYLDIN 1678
Query: 671 RLYSNDIHAMANTYGIEAANKVIIKEIQNVFXVYGITVDPRXXTLIADYMTYNG 832
+ SNDIHAM NTYG+EAA II E++ VF YGI VD R LIAD+MT++G
Sbjct: 1679 EVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDG 1732
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 58.8 bits (136), Expect = 5e-09
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Frame = +2
Query: 521 LRETAMKSVVHEIKHIKRAI---THKDNDIVY-LKTEGINILQMFKYNHLLDMNRLYSND 688
L+ K +V I ++RA+ T ++ND Y L EG N+L + + D + SN
Sbjct: 1161 LKSMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGV-DAMKTKSNH 1219
Query: 689 IHAMANTYGIEAANKVIIKEIQNVFXVYGITVDPRXXTLIADYMTYNG 832
I + T GIEAA + II EIQ +G+ +D R L+AD MTY G
Sbjct: 1220 IMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKG 1267
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/81 (32%), Positives = 43/81 (53%)
Frame = +2
Query: 590 DNDIVYLKTEGINILQMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFXV 769
DN+ + L TEG+N+L + + + D R SN + + GIEA + ++ E++ V
Sbjct: 1321 DNEWM-LDTEGVNLLAVMCHEDV-DATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 1378
Query: 770 YGITVDPRXXTLIADYMTYNG 832
G V+ R ++ D MTY G
Sbjct: 1379 DGSYVNYRHLAILCDTMTYRG 1399
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +2
Query: 608 LKTEGINILQMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFXVYGITVD 787
L TEG+N+L + + + D R SN + + GIEA + ++ E++ V G V+
Sbjct: 1364 LDTEGVNLLAVMCHEDV-DATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVN 1422
Query: 788 PRXXTLIADYMTYNG 832
R ++ D MTY G
Sbjct: 1423 YRHLAVLCDTMTYRG 1437
>03_06_0595 -
34955345-34955464,34955495-34956256,34956384-34956507,
34957111-34957167,34958222-34958366,34958860-34958909,
34959366-34959514,34959955-34960146
Length = 532
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 395 ISDVVGSVRNATNYTFDTKNHQWCELTVLFPISFLR 502
++D++ + Y+FD HQWCEL++L +S R
Sbjct: 42 VADILIIAAHVVLYSFDDNIHQWCELSLLIVVSDTR 77
>07_01_0769 +
5908942-5908946,5909085-5909666,5910370-5910429,
5910635-5910674,5910767-5910860,5911582-5911952
Length = 383
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +1
Query: 511 VSSSTRNRHEVCRPRNQTHKTCDHS*RQ*HRLSKNRRHQHIADVQIQSFAGHEQTVQQRH 690
V R +H C R + + H ++ H+ + R HQH + + E+ ++ H
Sbjct: 52 VKVDDREQHW-CEERGEKRRRVGHGQQRSHQRDQERSHQHDQERSV------ERDQERSH 104
Query: 691 TRDGQHVWHRSRQQSHHKGDTKRIXR 768
RD + R +++SH + + + R
Sbjct: 105 QRDQEGSVERDQERSHQRDRHRSVKR 130
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 49 KHAKATCGVMWASEQKKQRARAAKSDEDD---GDDAPEPTDTANNDLDS 186
KH A +E+KK+ AAK+ EDD D+ E D A+ DS
Sbjct: 360 KHKDAEKAAFDEAEKKKEEEEAAKAGEDDDDLDDEDAEDEDKADEKADS 408
>11_06_0498 -
24344454-24344660,24344840-24344944,24345324-24345407,
24345523-24345615,24345795-24345920,24347157-24347315,
24347398-24347475,24348316-24348375,24349433-24349555,
24349961-24350041
Length = 371
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 430 SRVSDATNDIGNNFAGISVIFFWRLLTFFGLLRLII 323
S V + D G FAG +V FW L +G ++L +
Sbjct: 286 SFVRAKSEDQGRCFAGTTVTLFWSCLLLYGAVKLFL 321
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 553 RNQTHKTCDHS*RQ*HRLSKNRRHQHIADVQIQSFAGHEQTVQQRHTRDGQHVWHRSRQQ 732
+ Q H+ + RQ H+ +N H + + Q + VQQ+ ++ H H + Q
Sbjct: 448 QQQQHRLDEQHQRQDHQPKQNHPHDELQHQKQQPEQQQQDQVQQQQQQEQPHDQHLQQVQ 507
Query: 733 SH 738
H
Sbjct: 508 MH 509
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,484
Number of Sequences: 37544
Number of extensions: 336055
Number of successful extensions: 1331
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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