Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_E10
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.053
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   2.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 37  TVVRKHAKATCGVMWASEQKKQRARAAK 120
           T+VR H  +TC V  +  QKK R   AK
Sbjct: 339 TIVRNHLNSTCSVTNSPHQKKLRFHLAK 366


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +2

Query: 401 DVVGSVRNATNYTFDTKNHQWCELTV 478
           +++ ++RN   Y  +T+N+Q C+ ++
Sbjct: 338 ELIENLRNHPEYIDETRNYQECKCSI 363


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 619 RHQHIADVQIQSFAGHEQTVQQRHTR-DGQHVWHRSRQQS 735
           +H H+   Q Q    H+   QQ+H +   QH+ ++ +QQS
Sbjct: 175 QHPHMQPQQGQ----HQSQAQQQHLQAHEQHMMYQQQQQS 210


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 82  ASEQKKQRARAAKSDEDDG 138
           ASE+   + +  K DEDDG
Sbjct: 205 ASEEHGNKKKKNKEDEDDG 223


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 293 LPPLILGPRILALLFFYC 240
           +PPL L  ++L   FFYC
Sbjct: 298 VPPLSLHGQLLWREFFYC 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,507
Number of Sequences: 438
Number of extensions: 3425
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)