Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E09
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 130 2e-31
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 39 8e-04
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.47
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.5
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.7
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 9.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 130 bits (314), Expect = 2e-31
Identities = 59/97 (60%), Positives = 78/97 (80%)
Frame = +2
Query: 251 VLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPAR 430
++MGKNTM+R+A++ +++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APAR
Sbjct: 51 LIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPAR 110
Query: 431 PGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 541
P AIAPL V +PA NTG+ P KTSFFQAL IPTKI+R
Sbjct: 111 PNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147
Score = 104 bits (249), Expect = 2e-23
Identities = 64/202 (31%), Positives = 90/202 (44%)
Frame = +1
Query: 121 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSXYRAHGKKHNDAQSHQRPP 300
K+ YF K+ L ++Y F+V DNV SQQM +R LRG+ GK ++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 301 GQQSSPRETVATHQGQRWLRVHXXXXXXXXXQTVGEQXXXXXXXWCHCPIVXXXXXXXXX 480
+ +G + P+
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 481 XXXXEDLFLPGSFYPYQDFKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 660
+ F P + +GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187
Query: 661 KQVYDSGTIFAPEILDIXPXDL 726
+YD G +F+PEILD+ DL
Sbjct: 188 LTIYDQGNVFSPEILDVSEEDL 209
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 39.1 bits (87), Expect = 8e-04
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +2
Query: 251 VLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 415
+ MGK +M KA+ ++H +N L KLL G VG +FT EV E+ V
Sbjct: 65 IFMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFV 120
Query: 416 QAP-ARPGAIAPLSVVIPA 469
Q AR GA+AP + VIPA
Sbjct: 121 QNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.47
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 252 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 359
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 396 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 271
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 492 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 322
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 321 SRAGL 307
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 411 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 250
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 288 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 467
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 468 PTTPAS 485
+TP +
Sbjct: 577 SSTPVT 582
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 22.6 bits (46), Expect(2) = 9.0
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Frame = +3
Query: 237 WLQXSCSWEKTQ*CAKPSKTTWTTIQPSRNCC-----HTSRATLASCSPAETSLRSVTNC 401
W++ CS E + A + ++I+ + C TS L S + +
Sbjct: 76 WIEAPCSNEDVEFVAISDPSGTSSIEKVSSICLKNDIQTSSFVLPSGKTRYFEYKKL-RF 134
Query: 402 WRTKSKLQLVLVPLPHCQSSFPPTTPASVQ 491
+ LQ VL+PL S +TPA +Q
Sbjct: 135 YLEPLNLQWVLMPLETSAYSLVTSTPAYIQ 164
Score = 21.0 bits (42), Expect(2) = 9.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 609 HPSQHVEHLSILIWSC 656
HP + +S+LIW C
Sbjct: 201 HPFYLFQAVSVLIWLC 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,792
Number of Sequences: 5004
Number of extensions: 70660
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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