Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E07
(1022 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 34 0.73
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 34 0.73
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 34 0.73
AJ509090-1|CAD48858.1| 625|Homo sapiens Wiskott-Aldrich syndrom... 31 5.1
AF134304-1|AAD33053.2| 496|Homo sapiens Scar2 protein. 31 5.1
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 6.8
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 6.8
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 6.8
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 6.8
BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein. 31 8.9
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.73
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +2
Query: 587 GGRPLXXPPPXPXPXLKXXXPPLXLXXGG-GXPPXFXTLSPXXFXKKNPFVXXKKXPPPP 763
G P PPP P P + PP + G G PP SP F F PPPP
Sbjct: 315 GFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPP---PSPPSFPPHPDFAAPPPPPPPP 371
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.73
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +2
Query: 587 GGRPLXXPPPXPXPXLKXXXPPLXLXXGG-GXPPXFXTLSPXXFXKKNPFVXXKKXPPPP 763
G P PPP P P + PP + G G PP SP F F PPPP
Sbjct: 315 GFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPP---PSPPSFPPHPDFAAPPPPPPPP 371
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.73
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +2
Query: 587 GGRPLXXPPPXPXPXLKXXXPPLXLXXGG-GXPPXFXTLSPXXFXKKNPFVXXKKXPPPP 763
G P PPP P P + PP + G G PP SP F F PPPP
Sbjct: 315 GFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPP---PSPPSFPPHPDFAAPPPPPPPP 371
>AJ509090-1|CAD48858.1| 625|Homo sapiens Wiskott-Aldrich syndrome
protein family member 4 protein.
Length = 625
Score = 31.5 bits (68), Expect = 5.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +2
Query: 587 GGRPLXXPPPXPXPXLKXXXPPLXLXXGG-GXPPXFXTLSPXXFXKKNPFVXXKKXPPPP 763
G P PPP P P + PP + G G PP S F F PPPP
Sbjct: 443 GFAPPPAPPPPPPPMIGIPPPPPPIGFGSPGTPPP---PSSPSFPPHPDFAAPPPLPPPP 499
>AF134304-1|AAD33053.2| 496|Homo sapiens Scar2 protein.
Length = 496
Score = 31.5 bits (68), Expect = 5.1
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +2
Query: 587 GGRPLXXPPPXPXPXLKXXXPPLXLXXGG-GXPPXFXTLSPXXFXKKNPFVXXKKXPPPP 763
G P PPP P P + PP + G G PP S F F PPPP
Sbjct: 314 GFAPPPAPPPPPPPMIGIPPPPPPIGFGSPGTPPP---PSSPSFPPHPDFAAPPPLPPPP 370
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.1 bits (67), Expect = 6.8
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +1
Query: 589 GPPXXXXPPXAXPXFKXXXPPXXFIXGGGXXPXFXNPLPGXIXXXXPLCXXKKXPPPPL 765
GPP PP P + PP G P PG PL PPPP+
Sbjct: 242 GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV 300
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.1 bits (67), Expect = 6.8
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +1
Query: 589 GPPXXXXPPXAXPXFKXXXPPXXFIXGGGXXPXFXNPLPGXIXXXXPLCXXKKXPPPPL 765
GPP PP P + PP G P PG PL PPPP+
Sbjct: 242 GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV 300
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.1 bits (67), Expect = 6.8
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +1
Query: 589 GPPXXXXPPXAXPXFKXXXPPXXFIXGGGXXPXFXNPLPGXIXXXXPLCXXKKXPPPPL 765
GPP PP P + PP G P PG PL PPPP+
Sbjct: 279 GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV 337
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.1 bits (67), Expect = 6.8
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +1
Query: 589 GPPXXXXPPXAXPXFKXXXPPXXFIXGGGXXPXFXNPLPGXIXXXXPLCXXKKXPPPPL 765
GPP PP P + PP G P PG PL PPPP+
Sbjct: 242 GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV 300
>BC038446-1|AAH38446.1| 673|Homo sapiens SF1 protein protein.
Length = 673
Score = 30.7 bits (66), Expect = 8.9
Identities = 17/56 (30%), Positives = 21/56 (37%)
Frame = +2
Query: 596 PLXXPPPXPXPXLKXXXPPLXLXXGGGXPPXFXTLSPXXFXKKNPFVXXKKXPPPP 763
P PPP P P + PP G PP P + + +P PPPP
Sbjct: 69 PPPPPPPPPPPPQQPPPPPPPPSPGASYPPPQPPPPPPLYQRVSP-----PQPPPP 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,743,470
Number of Sequences: 237096
Number of extensions: 2077917
Number of successful extensions: 3163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2714
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13765548174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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