Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_E07
         (1022 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.3  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    31   1.3  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   7.1  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 609 PPXGPXPV*XXGPPXXFYXXGGVXPXXXKPSPRXXXKKKTPLXGXKKXPPPP 764
           PP G  P+    PP      GG+ P    P P        P+ G    PPPP
Sbjct: 715 PPPGLPPITGGPPPPP--PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 609 PPXGPXPV*XXGPPXXFYXXGGVXPXXXKPSPRXXXKKKTPLXGXKKXPPPP 764
           PP G  P+    PP      GG+ P    P P        P+ G    PPPP
Sbjct: 715 PPPGLPPITGGPPPPP--PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 609 PPXGPXPV*XXGPPXXFYXXGGVXPXXXKPSPRXXXKKKTPLXGXKKXPPPP 764
           PP G  P+    PP      GG+ P    P P        P+ G    PPPP
Sbjct: 298 PPPGLPPITGGPPPPP--PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +1

Query: 586 GGPPXXXXPPXAXPXFKXXXPPXXFIXGGGXXPXFXNPLPGXIXXXXPLCXXKKXPPPPL 765
           G P     PP   P F    PP   I G    P      P       P+      PPPP+
Sbjct: 687 GQPRPAGLPPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPM 746

Query: 766 F 768
           F
Sbjct: 747 F 747


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/61 (22%), Positives = 19/61 (31%)
 Frame = +1

Query: 697 PLPGXIXXXXPLCXXKKXPPPPLFXXIXXXGFXXAPPXXKXPLXXXPLFXXXEKFFXKXX 876
           P+P  +    P C  +  PPPP+            PP    P    P       F+    
Sbjct: 48  PMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYV 107

Query: 877 P 879
           P
Sbjct: 108 P 108


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +2

Query: 593 RPLXXPPPXPXPXLKXXXPPLXLXXGGGXPPXFXTLSPXXFXKKNPFVXXKKXPP 757
           +P   P P P P LK    P+        P     L P    KKNP    K  PP
Sbjct: 255 KPKPKPMPKPKPKLKLKPKPMPF------PKPKPKLKPKTKPKKNPVPILKPIPP 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,143
Number of Sequences: 27780
Number of extensions: 250204
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2699257404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)