Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E06
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 31 0.85
05_03_0373 - 13194723-13195847,13196219-13196809 31 1.1
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 3.4
04_04_1129 - 31107892-31110246 29 3.4
02_04_0311 + 21936812-21937861 29 3.4
04_04_0057 + 22410167-22411330 29 4.5
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 6.0
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 28 7.9
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 28 7.9
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 31.5 bits (68), Expect = 0.85
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +2
Query: 599 PGSGSSFKSFCDLAAH*RTAAGIRNGLWCCRVNAFNTAAESAGTRDSVASELRSTSTMHS 778
P GS S C + TA G+ GLWCCR AA + VA+ + +T
Sbjct: 397 PSCGSYTASACPIYVESGTA-GVVIGLWCCRC---KQAARALAMAVVVATNVEATIWQRQ 452
Query: 779 TXTPAP 796
+ P P
Sbjct: 453 SWKPMP 458
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 467 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 372
V+E G + QL+R WR + RG++D D R R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 588 DPQPPAAVLAS--SPFVTSQPTEELLREFETVYGAVELTHL 704
DP PA V S SP + QP EL+RE T+ +E+ HL
Sbjct: 78 DPDHPAPVNLSLESPMLKVQPANELIREVATL--ELEIKHL 116
>04_04_1129 - 31107892-31110246
Length = 784
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 546 PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEEL-LREFETV--YGAVELTHLTPPQ 716
PS+ +S +P + P P +LA+S S PT L L + V + L PP+
Sbjct: 103 PSLSAALSALPSQ--PDPALLLLAASSLPASDPTPLLALVAWARVQPWFVPSDDTLLPPR 160
Query: 717 SPPGPATQLL 746
PP P QLL
Sbjct: 161 RPPRPGHQLL 170
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 522 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEE 653
WLE V P N+ + P P PPA +SSP + EE
Sbjct: 154 WLEGHVTCPLCRANLEKQPA---PSPPAVEFSSSPAAAAAAAEE 194
>04_04_0057 + 22410167-22411330
Length = 387
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 522 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSP 626
WLE +V P N+ + P P P AA + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 582 RVDPQPPAAVLASSPFVTSQPT-EELLREFETVYGAVELTHLTPPQSPPGPATQ 740
+V P PP+A + S P + P + ET++ + + PQ+PP P Q
Sbjct: 302 QVPPVPPSAPVPSVPALPRDPYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQ 355
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +3
Query: 567 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLL 746
+E P + P PP + AS S P + LLR+ V PP PP PA LL
Sbjct: 4 AEDPAKPPPPPPPQLEASG----SDPDDPLLRDRVVVIAPPPPP--PPPPPPPAPAPALL 57
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 471 LLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVD 590
L+ +L C ++N+ +LE+++ P +FE + +R+D
Sbjct: 754 LVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRID 793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,840,223
Number of Sequences: 37544
Number of extensions: 427053
Number of successful extensions: 1351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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