Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_E06
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.0  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   8.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 106 CLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLW---TFIRIRGTKSLQQ 249
           C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 143 PFWQAFLYCA*RHTLVRKR 87
           P W+ FLYC       RKR
Sbjct: 424 PKWRQFLYCLAGDESFRKR 442


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 383 CSARKVFKQITIIIEEILNFEQQTALIVSEQID 285
           CS   V   IT + + +  F ++ AL +SE ++
Sbjct: 135 CSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 77 RNPS*SQNYTKKPKIRLLTASH 12
          RNP+ +  Y  K   R++ ASH
Sbjct: 8  RNPASANYYENKDGARIVKASH 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,009
Number of Sequences: 438
Number of extensions: 4028
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)