Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_E03
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 221 1e-58
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 58 2e-09
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.47
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.4
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.4
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.5
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.5
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 4.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 221 bits (539), Expect = 1e-58
Identities = 107/196 (54%), Positives = 140/196 (71%)
Frame = +2
Query: 119 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 298
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 299 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 478
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 479 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEXTLLNMLNISPILIWSCC 658
+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SE TLLNMLNISP
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187
Query: 659 *XGI*SGTIFAPEILD 706
G +F+PEILD
Sbjct: 188 LTIYDQGNVFSPEILD 203
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 58.0 bits (134), Expect = 2e-09
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Frame = +2
Query: 56 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 235
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 236 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 400
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 401 ENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISK 538
E+ VQ AR GA+AP + VIPA G P + + L +PT +
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKN 176
Query: 539 GTIEIINDVHILKPGDKVGASEXTLLNMLNIS 634
G + ++ D + G ++ + + LL + I+
Sbjct: 177 GVVTLLADFPLCTEGQQLDSRQTRLLKLFGIT 208
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.47
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 249 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 356
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 694 RXKNSSRSYTXLTTRPYENGRDVQHVEKGGFRSSNLVTGLQDVYIVDDFN 545
R + + SY LT ++ DV GFRSSN + L+ V D N
Sbjct: 104 RVPSKNSSYETLTYSAKDSSDDVFTETNSGFRSSNQNSSLKSFQSVPDSN 153
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 555 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 430
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 1 YWHFEFCPARKSCVLSCP*ISSKSLRHT 84
YW F P C+LSC ISS S HT
Sbjct: 377 YWLFGISPIPYICILSC--ISSNSAGHT 402
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 315 RAGLLSRWSLMALRIIVFFPMSTILEPR 232
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 393 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 268
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 562 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 440
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 489 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 319
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 318 SRAGL 304
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 408 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 247
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 285 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 464
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 465 PTTPAS 482
+TP +
Sbjct: 577 SSTPVT 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,128
Number of Sequences: 5004
Number of extensions: 64751
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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