Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D23
         (965 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...   171   6e-43
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily ass...    29   6.5  
U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily ass...    29   6.5  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    29   6.5  

>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score =  171 bits (416), Expect = 6e-43
 Identities = 92/198 (46%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
 Frame = +1

Query: 40  MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 219
           MS  C IS         S  SG +F+RR+I K+I ENG DPI+  EL  + L        
Sbjct: 1   MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGT 60

Query: 220 XXXXXX-SATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIAR 396
                  S TSIP+ LK +QDEWD +ML++F+ RQQLQ ARQELSH+LYQHDAACRVI+R
Sbjct: 61  GSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISR 120

Query: 397 LTKEVTAAREALATLKPQAGIAAPQAPHPTEXXXXXXXXXXXXXDVVSRLQERATALTQE 576
           L+KE+TAAREAL+TLKP             E              ++++L+E++ +LT E
Sbjct: 121 LSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEA----ILAKLEEKSKSLTAE 176

Query: 577 RKRRGRTLPEGLLAPEQI 630
           RK+RG+ LPEGL   E++
Sbjct: 177 RKQRGKNLPEGLAKTEEL 194


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 384 CDSPTHKGGDGGAR---GPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVC 527
           CD  T++ G  G R   G   TE  G  CS+      G V      N+HVC
Sbjct: 489 CDPDTNRVGILGKRHLTGEERTEVKGSACSSNKDCKSGTVCVYVNINKHVC 539


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402 KGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVSSAGARHRTHAGTE 581
           K G+ G +G   T     H + P T    G     G + + C         R    +GT 
Sbjct: 233 KDGEEGPQGAPGTPGNAGHDAFPGTPGQAGKPGAPGKDANYCPCP-QRQDDRTPPSSGTS 291

Query: 582 APRPHPARGTA--GTRA 626
           AP+P P   TA  GTRA
Sbjct: 292 APQPPPRGSTAAPGTRA 308


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 100 SGAVFERRIIEKYIIENGVDPINGKELRVEDL 195
           S +V +  ++EK I  +G+DPING+ +  +D+
Sbjct: 251 SKSVVKYDVVEKLIKGDGIDPINGEPMSEDDI 282


>U97592-2|AAB52870.1|  462|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform a protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 647 ESEDALICSGASSPSGRVRPRR 582
           +S+D   CSG S+P+G + PRR
Sbjct: 40  DSKDVPSCSGESTPAGTLSPRR 61


>U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform b protein.
          Length = 638

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 647 ESEDALICSGASSPSGRVRPRR 582
           +S+D   CSG S+P+G + PRR
Sbjct: 216 DSKDVPSCSGESTPAGTLSPRR 237


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 212 GVLISIRSSTLNSLPLIGSTPFSIMYFSMILLSNT 108
           GVL+ I ++T  +L L+  TPF    F+M++L+ T
Sbjct: 264 GVLVGIPAATAMALLLMQYTPFEGFPFAMVVLAPT 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,829
Number of Sequences: 27780
Number of extensions: 364299
Number of successful extensions: 1298
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)