Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D22
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.7  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   9.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 344 RKAHPLPG*KRKSPTP*KCTFPNPTPXVKHVPYPVKE 454
           R   P  G  R+SP+P   + P+  P    VP P  +
Sbjct: 348 RSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPD 384


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 324 FPFPTPXEKHIPYPVRKENPLPRESARSPTL 416
           F  P P E+H+ + +  E PL +   R P L
Sbjct: 258 FLLPKPDEQHVVFVIGLEPPLRQGQTRYPFL 288


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 327  PFPTPXE--KHIPYPVRKENPLPRESARSPTL--PRLS 428
            P PTP      +P P  K  P+P  S+ +P++  PR S
Sbjct: 1218 PVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSS 1255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,549
Number of Sequences: 5004
Number of extensions: 42632
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)