Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D22
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   8.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.0  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 535 QTRPRQGICARTLPRLKRKF 594
           + RPR    A  L RLKR+F
Sbjct: 20  EKRPRTAFSAEQLARLKREF 39


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 535 QTRPRQGICARTLPRLKRKF 594
           + RPR       L RLKR+F
Sbjct: 20  EKRPRTAFSGEQLARLKREF 39


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 774 GFXRVSXGWDMHG*VCPHDLXVLVPLCIRVRSRHMYGNLYG 652
           G   +  GW+++G V P  +   +PL  + RS    G   G
Sbjct: 119 GLVSIIDGWELNGEVFPSKMDHQLPL--KQRSSEFCGKNIG 157


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 PLPRESARSPTLPRLSNMSLTQLKRLS 461
           PLP      PT+P + +M+    +R+S
Sbjct: 431 PLPNMPGSMPTMPTMPSMAGPIRRRIS 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,978
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)