Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_D21
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 138 9e-34
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 40 3e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.49
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 2.0
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 2.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.6
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 4.6
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 27 4.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 6.1
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 6.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 6.1
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 8.0
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 138 bits (334), Expect = 9e-34
Identities = 79/195 (40%), Positives = 108/195 (55%), Gaps = 12/195 (6%)
Frame = +2
Query: 239 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHGQDIDCGGGYLKVFDCKLEQKD 415
+ GL ++A +A+S +F +P + K LVVQ+ V + ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 416 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 574
M Y IMFGPD CG + VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 575 IVKPDNTYEVLIDNEKVESGDLXADW--DFLPPKKIKDPEAKKPXDWDDKPTIPXPEXXK 748
IVKPD T+EV I+ + V G L D+ LPP +I DPE KP DW D+P IP P K
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVK 266
Query: 749 PEDWDK--PEHIPNP 787
P+DWD+ P IP+P
Sbjct: 267 PDDWDEDAPRMIPDP 281
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 647 DWDFLPPKKIKDPEAKKPXDW-DDKPT-IPXPEXXKPEDWDKPE 772
DWD P+ I DP+A KP DW +D+P IP PE KPEDWD E
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEE 312
Score = 29.5 bits (63), Expect = 0.65
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 784 PXSPKPXXWDDXXDGXWDP 840
P + KP WDD DG W P
Sbjct: 300 PEAQKPEDWDDEEDGDWIP 318
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 40.3 bits (90), Expect = 3e-04
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Frame = +2
Query: 236 DDKGLKTSEDARFYAL-SRKFKPFSNEGK--PLVVQFTVKHGQDIDCGGGYLKVFDCKLE 406
D+ GL T + + + L S P + + P+V+ F VK + CG Y+ + +
Sbjct: 72 DEYGLITLKSNKPHILISNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSN 130
Query: 407 QKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIV 580
K++ E P I FG CG I SY GK HL + T +YTL++
Sbjct: 131 PKNVSKEPPSVIRFGVKKCGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLL 190
Query: 581 KPDNTYEVLIDNEKVESGDLXADWDFLPPKKI 676
+ + T + D V +GD+ ++ P K I
Sbjct: 191 Q-NTTVVIRRDQSVVYTGDVGTNFFHSPTKWI 221
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.49
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -1
Query: 203 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 36
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 35 HLLQQKT 15
LL +T
Sbjct: 635 DLLSNQT 641
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 585 PTTPMKSSLTMRKLNLATXRPIGTSFRPRKSRTLKPRNXKTGMTSPL 725
P+ P SS +LA+ P ++FRP+ S T+ + TSPL
Sbjct: 314 PSYPYSSSRPSASASLASS-PTRSAFRPKTSETVSSEVVSSPPTSPL 359
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 497 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES-GDLXADWDFLPPKK 673
S + K H KK +D Y+H+Y + P + + + ++ ES + D+LP
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196
Query: 674 IKDPEAKKPXDWDDKPT 724
+K + P D P+
Sbjct: 197 MKQKKG-GPKDSSKHPS 212
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 212 PAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIEDNASKLTTTSTT 60
P VN + S + ++ L S + S+ NF+S ++S + + S L+T STT
Sbjct: 492 PPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTT 543
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 368 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 535
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 536 R--CKDDVYTH 562
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 636 TXRPIGTSFRPRKSRTLKPRNXKTGMT 716
T P+G S+RP+ SRT ++ + MT
Sbjct: 165 TKFPLGKSYRPKASRTTSSQSVASTMT 191
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 587 DNTYEVLIDNEKVESGDLXADWDFLPPKKIKDPEAKKPXDWDDKP 721
D E+ ++N ++ + WD PP + K+ WD P
Sbjct: 198 DKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAP 242
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 380 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 559
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 560 HLYTLIVKP 586
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 656 FLPPKKIKDPEAKKPXDWDD-KPTIP 730
F+PP +I PE K +WD+ P P
Sbjct: 100 FIPPARILFPEEKLSMEWDNIMPNAP 125
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 659 LPPKKIKDPEAKKPXDWDDKPTIP 730
LP + K P AKKP D++ P P
Sbjct: 168 LPSPEYKAPPAKKPEDYEASPGEP 191
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 121 EEKFPDDSWESNWVYS 168
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,608,572
Number of Sequences: 5004
Number of extensions: 80863
Number of successful extensions: 290
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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