Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D19
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    83   7e-17
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    30   0.37 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    28   2.0  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   2.0  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   4.5  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    27   4.5  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   6.0  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
 Frame = +1

Query: 229 PFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAE 408
           PFKT   A+H    +   TI+V  K+ +++++    + LKK +K   +   K    A+AE
Sbjct: 38  PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93

Query: 409 EENT-------EKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRL 567
                      E  ++ L+ AK I+L+E    P A  + I ++T  R  R+ + GWVHR+
Sbjct: 94  AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153

Query: 568 RRQGKSLAFLTLRDGTGYLQCVLHG 642
           R Q K + F+ LRDGTG+LQCVL G
Sbjct: 154 RTQ-KGIIFIILRDGTGFLQCVLSG 177



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 672 LSTESSVXLYGKXXAVPXGKXXPGXXXLTXDXWEXXGXPP 791
           L  ES+V LYG    +P GK  PG   L  D ++     P
Sbjct: 190 LGPESTVCLYGVIKELPEGKSAPGNHELVVDYYQILHAAP 229


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 523 HRGQRICIRGWVHRLRRQGKSLAFLTLRDGT 615
           H G+ I I GWV  +R+  K++ F  + DGT
Sbjct: 18  HNGELISINGWVRSIRKL-KNVCFAMVSDGT 47


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 607 DGTGYLQCVLHGLLCQTYN 663
           D  GYL+C+LHG   + YN
Sbjct: 295 DHLGYLECILHGDSAKRYN 313


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 148 VGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFP 282
           VGN+ LS I  +                FK  L+ +   GK+PFP
Sbjct: 113 VGNIELSRIVNADVRLDSSKFDIGIRPSFKNALEELTKKGKKPFP 157


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = -1

Query: 303 F*VNINCGKWLFASMMHCFQYCLEW---FLFRTITCIVIAILIRGI---YLGQAKVSN 148
           F  N N GK++ A ++H   Y LE    FL+  +  +   I   G+   +LG A   N
Sbjct: 608 FHYNYNIGKFVVAWLLHWAPYILETDRVFLYHYLPALYFGIAALGVSWSFLGNAVFGN 665


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 219 ERETIQDNIESNASCWQRAISHNL 290
           E +TI DN+ SN   WQ+   H +
Sbjct: 59  ELKTIDDNVHSNNLSWQKIQEHEV 82


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 451 KKILLQEDPSLPKATVVKICETTEHR 528
           +KILL E P  P A   K+CET   R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,616
Number of Sequences: 5004
Number of extensions: 57033
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)