Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_D18
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 34 0.16
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 31 1.2
04_03_0904 + 20717005-20718087 31 1.5
04_03_0799 - 19805190-19805749,19806316-19806403 29 3.5
08_02_1319 + 26117353-26117784 29 6.2
07_03_0579 + 19649978-19650442 29 6.2
07_03_0568 - 19593265-19593729 29 6.2
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 29 6.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 6.2
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 28 8.1
05_03_0039 - 7621613-7622695 28 8.1
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = +2
Query: 668 CLLLTPYTKRYKYXKGPCGQTLPRAYPKPXPYPSXXPSIPGXKXXPTPXX*XCXPXP 838
C L PY+ CG PKP P P PS P K P P P P
Sbjct: 131 CAKLPPYSSAKVQCYKKCGDKCFHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKP 187
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 746 PKPXPYPSXXPSIPGXKXXPTPXX*XCXPXP 838
PKP P P P PG K P P P P
Sbjct: 190 PKPGPKPKPKPPKPGPKPKPKPPKPGPKPKP 220
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 406 LPRLSNMSLTQLKR---LSRYQFTYRNPTQSKRRCLTQYMSHSTDPSPSRYM 552
L LSN L+Q++R L +Y Y + + L QY+ H TDPS S ++
Sbjct: 676 LMSLSNYMLSQMQRMEFLQKYPLVYTSLQLIQPCHLLQYIVHLTDPSRSMFI 727
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +2
Query: 680 TPYTKRYKYXKGPCGQTLPRAYPKPXPY---PSXXPSIPGXKXXPTPXX*XCXPXP 838
TPYT K P + P+ P P PY P PS K PTP P P
Sbjct: 288 TPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTP 343
Score = 29.9 bits (64), Expect = 2.7
Identities = 39/147 (26%), Positives = 51/147 (34%), Gaps = 7/147 (4%)
Frame = +2
Query: 392 HVPQPYPXCQTCPL--PS*RDCQGTSSRTATLPSRKEGALPSTCPTRQTRPRQGICARTL 565
+ P P P T P P + + T T P+ K P+ PT + +P+ T
Sbjct: 112 YTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTP 171
Query: 566 PRLKRKFMFQSKCT----CPLLTQ*R-KKYLTP*RFPYMCLLLTPYTKRYKYXKGPCGQT 730
+ Q K T P T K P PY TP YK P
Sbjct: 172 TPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTP---TPTPPSYKPQPKPNPPP 228
Query: 731 LPRAYPKPXPYPSXXPSIPGXKXXPTP 811
+ PKP P P+ P+ P K P P
Sbjct: 229 TYKPQPKPNPPPTYKPAPPTYKPQPKP 255
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 356 PVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDC 451
PV K +P+PV P P P C CP PS C
Sbjct: 94 PVCKLVPFPVPYPAPPPPPAC--CP-PSTHQC 122
>08_02_1319 + 26117353-26117784
Length = 143
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 416 CQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPTRQTRPRQGICARTL 565
C PL D +GTS L ++ + P TCP + RP +RT+
Sbjct: 76 CTGKPLEMLLD-RGTSKPDKYLKAKSDSVRPRTCPAKSGRPPGASSSRTV 124
>07_03_0579 + 19649978-19650442
Length = 154
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 443 RDCQGTSSRTATLPSRKEGALPSTCPTRQTRPRQGICARTLPRLKRKFM 589
RD + R A + +G P+ P PR ++LPRLK + +
Sbjct: 91 RDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>07_03_0568 - 19593265-19593729
Length = 154
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 443 RDCQGTSSRTATLPSRKEGALPSTCPTRQTRPRQGICARTLPRLKRKFM 589
RD + R A + +G P+ P PR ++LPRLK + +
Sbjct: 91 RDDPFRAVRVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 386 KVHVPQPYPXCQTCPLPS*RDCQGTSSRTATL 481
K+ +P P C TC S RDC G T L
Sbjct: 78 KLGLPNGAPQCATCGSRSIRDCDGKKKLTGKL 109
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.7 bits (61), Expect = 6.2
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = +1
Query: 319 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 498
SRS PRR A P GR +P P S RSP PR S S + R+P +RR
Sbjct: 226 SRS-PRRSASPPNGRNRSPTPNAS-RSPA-PRDSR---------SPMRADSRSPADHERR 273
Query: 499 CLTQYMSHSTDPSPSRY 549
++ ++ PSP Y
Sbjct: 274 DMST-AANGRSPSPRDY 289
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 316 SSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSN 423
+S S P+RK PGRK P P S + P N
Sbjct: 7 ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAEN 42
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 734 PRAYPKPXPYPSXXPS-IPGXKXXPTP 811
P+ P+P PYP P PG K P P
Sbjct: 146 PKPEPEPKPYPKPKPEPKPGPKPEPKP 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,197,514
Number of Sequences: 37544
Number of extensions: 368594
Number of successful extensions: 1610
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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