Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_D14
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 30 0.49
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 7.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 7.9
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/80 (30%), Positives = 32/80 (40%)
Frame = -3
Query: 638 PXPRARHAEIEASAXELPPRQDAAPPWSGDRIATRNPQRAPPLPGPREASQXARTPPRTR 459
P PR+ A + LPP+ +APP R A ++ PPL R S PP
Sbjct: 341 PPPRSN----AAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 458 RCGIHEPP*PQSRAADVATP 399
P P A+ +TP
Sbjct: 397 GRSAPALP-PLGNASRTSTP 415
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 284 PNVGGPDVVVRRLYTGVVWSMALYGAPVWCHALTRDNVAAL 406
PN+GG +R++ GV+ MA G PV C D + A+
Sbjct: 722 PNMGGKSTYIRQV--GVITVMAQIGCPVPCEVADLDIIDAI 760
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/67 (23%), Positives = 23/67 (34%)
Frame = -3
Query: 629 RARHAEIEASAXELPPRQDAAPPWSGDRIATRNPQRAPPLPGPREASQXARTPPRTRRCG 450
R +H E + E P + + + + PP P E + PP G
Sbjct: 184 RPKHHEFDDEDREFPAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPG 243
Query: 449 IHEPP*P 429
H PP P
Sbjct: 244 EHMPPPP 250
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Frame = -3
Query: 638 PXPRARHAEIEASAXELPPRQDAAPPWSGDRIATRNPQRAPPLPG----PREASQXARTP 471
P P +E+ PPR PP A P +APP+P P + + ++P
Sbjct: 128 PAPPTPQSELRPPT-SAPPRPSIPPPSPAS--APPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 470 PRTRRCGIHEPP*P 429
P PP P
Sbjct: 185 PSAPSLPSAVPPMP 198
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 353 YGAPVWCHALTRDNVAALRRPQRAIAVRAVRG 448
YG C LT +N++A R Q AVR V G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 590 LPPRQDAAPPWSGDRIATRNPQRAPPLPGPREASQXART 474
LPPR ++ SG P PP P PR++S R+
Sbjct: 1021 LPPRSGSSS--SGVPAPNLTPVNVPPTPPPRKSSASQRS 1057
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -3
Query: 587 PPRQDAAPPWSGDRIATRNPQRAPPLPGPREASQXARTPPRTRRCGIHEP 438
PP + AAP S A P+ P P P S+ + PP T G P
Sbjct: 9 PPPRRAAPARSASTAAALPPRTMAPPPAP---SRVQQAPPPTAVQGGSSP 55
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 638 PXPRARHAEIEASAXELPPRQDAAPPWSGDRIATRNPQRAPP 513
P RA A ++A LPPR A PP A Q+APP
Sbjct: 10 PPRRAAPARSASTAAALPPRTMAPPP------APSRVQQAPP 45
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 200 SSTRPRYRNPVASISTRTPPIXRWAP 123
SS+ PR +P+AS + PP+ + +P
Sbjct: 424 SSSNPRTSSPLASNAENKPPVAQQSP 449
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 418 ARDCGQGGSWIPHRLVRGGV 477
ARD G GSWI +L GG+
Sbjct: 365 ARDKGLPGSWIFRKLTPGGI 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,672
Number of Sequences: 5004
Number of extensions: 45236
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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