Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D11
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    67   2e-12
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.9  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   4.3  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   5.7  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.7  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   7.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.9  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = +2

Query: 110 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 286
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 287 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLGRHFCP 421
            F  K  GLT ++ W T N L + + + ++ A GL + +   F P
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSP 103



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
 Frame = +3

Query: 411 TFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQK 590
           TF+P T  KT  L     +  +  + +++      + D    + ++G+LAG    +D QK
Sbjct: 100 TFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLGDFT--VGHEGFLAGAEFGYDVQK 157

Query: 591 AKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCGVSMKWTAGS-ADTL- 761
              S     +GY +   ++     N    F  S Y +VS  ++ G ++ W A S A+ + 
Sbjct: 158 GNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNVTWDAASTANAIT 217

Query: 762 FGVGAKYALDQXAF 803
             + +KYALD+  F
Sbjct: 218 LELASKYALDKDTF 231


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 567 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 707
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 206 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 355
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 253 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 146
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +2

Query: 47  APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 208
           APIC EF+   Y F  L  T     +      YA  G   N   S  YH G    D+  +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342

Query: 209 SESGVEFTSGITSNQESGKVFGSLS 283
           +E+ +  T+G  + ++SG   GS S
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGSNS 367


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 204 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 296
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 402  LEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 500
            +E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3559 IEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,055
Number of Sequences: 5004
Number of extensions: 73765
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)