Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D10
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    31   0.009
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   7.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   7.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   7.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 23/79 (29%), Positives = 30/79 (37%)
 Frame = +2

Query: 356 PYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 535
           P  + K  P       P  +P    C   S R   G S RT  +  +K GA      + +
Sbjct: 171 PVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPRTRRV--KKPGAKQGAPTAEE 228

Query: 536 TRPRQGICARTLPRLKRKF 592
            RPR       L RLK +F
Sbjct: 229 KRPRTAFSGAQLARLKHEF 247


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  NLLVQHHETNARGRQ 86
           N+L++HHE  A G Q
Sbjct: 113 NMLLRHHEEVADGHQ 127


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  NLLVQHHETNARGRQ 86
           N+L++HHE  A G Q
Sbjct: 113 NMLLRHHEEVADGHQ 127


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 42  NLLVQHHETNARGRQ 86
           N+L++HHE  A G Q
Sbjct: 113 NMLLRHHEEVADGHQ 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,682
Number of Sequences: 336
Number of extensions: 2728
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)