Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D09
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   4.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   7.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -2

Query: 443  STRISATESSITSEAQTAAAAKGESTTET-----ESIRRVSAAKGNAASRKAT*GSRMTT 279
            ST  SAT SS +S A  + +    S+  T      S   ++AA    +S  +   + +T 
Sbjct: 965  STAASATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTD 1024

Query: 278  NSNSSVSAA 252
            +S SSV+ A
Sbjct: 1025 SSTSSVATA 1033


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 671 EEQPDIIIPTPAPTQPSKPEVXSSNIKPKRN 763
           E +P   +PTPAP   + P   S   +P RN
Sbjct: 322 EVKPAAPVPTPAPPVKTSPHPASYRPQPTRN 352


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 668 PEEQPDIIIPTPAPTQPSKPEVXSSNIKP 754
           PE +P    P+ AP+QPSK  V ++  KP
Sbjct: 304 PESEPSK--PSIAPSQPSKTNVSAAYEKP 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,884
Number of Sequences: 5004
Number of extensions: 41173
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)