Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D07
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38470.1 68415.m04725 WRKY family transcription factor contai...    34   0.14 
At5g59130.1 68418.m07411 subtilase family protein contains simil...    28   9.4  
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF...    28   9.4  

>At2g38470.1 68415.m04725 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain;
          Length = 519

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 391 SMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFA 212
           +M +  T+ N N       Q G ++  S   L IP   R  A SSI  SP L SP+T F+
Sbjct: 7   TMDNSRTRQNMNGSANWSQQSGRTSTSSLEDLEIP-KFRSFAPSSISISPSLVSPSTCFS 65

Query: 211 SDM 203
             +
Sbjct: 66  PSL 68


>At5g59130.1 68418.m07411 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 732

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 364 CSGWPGCACSPGLLQSLYAHPSAARPNPGHGTNS 465
           C+G     C+  L+ + +  P  AR + GHGT++
Sbjct: 167 CAGGKNFTCNNKLIGARHYSPGDARDSTGHGTHT 200


>At1g21320.1 68414.m02664 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 235

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 389 HAQPGHPEQHEQRPTQVHPE----GIVSILQYLLSRHPS 285
           H QP  P+ H+Q P+Q  P      I ++   ++  HP+
Sbjct: 38  HPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIHTHPN 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,614,602
Number of Sequences: 28952
Number of extensions: 318042
Number of successful extensions: 960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)