Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D04
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 611 TWRLNTDPHTGFRVDWSLAINR 546
           T +L+TDP+T F+V+ S  I R
Sbjct: 680 TEKLSTDPNTHFQVNQSHGIKR 701



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 530 YYTPKDLLSDGNVYDSTSTLDNISFLDK 447
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 17  STATSRERSNWLSVCHNYKFVKNVADLRSY 106
           S   S+    WL V  NYK +   A  R Y
Sbjct: 433 SAGFSQTNKTWLPVNENYKSLNLAAQKREY 462


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 33  ASGVTGFPSATIISL*KMSLISARIAGSVARRLPNAATQVS 155
           +SGV     A  +S+  +S+I+AR AG       NAA   S
Sbjct: 628 SSGVLAKKVADRVSMLMISVITARHAGEYVCTAENAAGTAS 668


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 530 YYTPKDLLSDGNVYDSTSTLDNISFLDK 447
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,842
Number of Sequences: 438
Number of extensions: 5448
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)