Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D01
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.6  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   4.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   8.2  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   8.2  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 211 VLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYK 390
           VL++     P+I+ +L  +    P   L++  L    S+ D+  + +YA      +   K
Sbjct: 3   VLIEWVAIYPQIYDILEHINYV-PSNTLQRLRLHQPWSKIDYDVWFLYASDEIRETCKVK 61

Query: 391 GFGDTK 408
            +G+TK
Sbjct: 62  YYGETK 67


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +1

Query: 367 FANSGNYKGFGDTKFIPNLPAESLELILKASKAYENDNTHILXLWQNTXNAIYGLAPRLP 546
           F NSGN   F   + I  +      L+   +++    N+ +  L+QN  +A   L   LP
Sbjct: 483 FPNSGNNPNFN--RGIAGIVPPGWRLVSSNTQSLST-NSAMTSLYQNASSADNNLGSSLP 539

Query: 547 VLVXLIRGV 573
            +V L RG+
Sbjct: 540 NVVPLSRGL 548


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 30/114 (26%), Positives = 48/114 (42%)
 Frame = +1

Query: 118 LDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLK 297
           LD   AF +L  N     +  S+  WN  L V+  T+       SLL   ++  P+  + 
Sbjct: 406 LDQGSAFPSLAKNP---VNPYSKDTWN--LNVIASTNG------SLLS--YIDNPVSGIT 452

Query: 298 QSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFGDTKFIPNLPAESLELILKAS 459
              L  G+    F  F  +    +  S NY+ +GDTK    +P +  E   +A+
Sbjct: 453 CPWLYVGMC---FSTFCWHVEDNYTYSVNYQHYGDTKLWYGIPGDQAERFERAA 503


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 412 IPNLPAES-LELILKASKAYENDNTH 486
           + NLP E+ L+ +L   + +ENDN H
Sbjct: 305 LKNLPEEATLDCMLSICQVFENDNLH 330


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 187 PDSNNEHIISHSLLDYQKPANYPTP 113
           P+ N  H++  SLL+Y+   +Y  P
Sbjct: 180 PNKNEAHLLVTSLLEYKLKGSYAAP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,448
Number of Sequences: 5004
Number of extensions: 52347
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)