Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C23
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   0.57 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   2.3  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.0  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   4.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   5.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   5.3  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   9.2  

>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 57  ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 230
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 231 AVAKYDEVAQTL 266
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
 Frame = -3

Query: 556  PSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSR-ISKTSFIL 380
            P + +S   + S       + +S  N+    +       +SA+P  +  S  I+ +S   
Sbjct: 690  PVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNT 749

Query: 379  LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATAT 227
            L+S+   + A   +   ++ S  +  A    +  L NS   ATS YL++++
Sbjct: 750  LLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSS 800


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 23/80 (28%), Positives = 43/80 (53%)
 Frame = +3

Query: 54  AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 233
           A N+K+ + + SE+ +  I ++   ++ + RN   R+ KL    DL+K+ K+     K+ 
Sbjct: 533 AINSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLE 586

Query: 234 VAKYDEVAQTLEFARDLSKQ 293
           V K +E+A   +    L+KQ
Sbjct: 587 VEKVEEIANLKKELTHLAKQ 606


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/85 (21%), Positives = 41/85 (48%)
 Frame = +3

Query: 63  AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 242
           A   K ASS   D+P+R+ +++      +  +  +  +SY          N+D+ +  + 
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426

Query: 243 YDEVAQTLEFARDLSKQVTAIAISS 317
           Y  V+++  F  D+S+    I++++
Sbjct: 427 YSAVSESSNFTHDVSRDNKEISLNA 451


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -3

Query: 553 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 422
           SSF      TS Y+ S+ FK SSV L +     +    AS+LPI
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
 Frame = -3

Query: 553  SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLAS--ALPICIRQSRISKTSFIL 380
            SSF    G TS Y  +K   SSS  LA+        VL+S  A P     +  S ++   
Sbjct: 844  SSFFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYS 903

Query: 379  LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSSFP 200
            + S++ R + +       S S  I +  +  + SL +S V   SSY+A++   +  S+ P
Sbjct: 904  IPSSSSRNEGT------TSYSSNITVTSSTLKPSLTSS-VSTASSYIASSASSNTLSTEP 956


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 78  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 251
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 252 VAQ 260
           V Q
Sbjct: 193 VTQ 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,728
Number of Sequences: 5004
Number of extensions: 45335
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)