Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C23
(972 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 33 0.41
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 33 0.41
U41549-3|AAA83283.2| 245|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 8.7
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 8.7
AF067940-2|AAC19203.1| 219|Caenorhabditis elegans Hypothetical ... 28 8.7
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 28 8.7
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 28 8.7
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 28 8.7
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 32.7 bits (71), Expect = 0.41
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 245
+E S EDK + +I +E ++ LE+ + R D++KA +++ D KVA
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079
Query: 246 DEVAQ 260
DE+ +
Sbjct: 1080 DEITK 1084
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 32.7 bits (71), Expect = 0.41
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 245
+E S EDK + +I +E ++ LE+ + R D++KA +++ D KVA
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079
Query: 246 DEVAQ 260
DE+ +
Sbjct: 1080 DEITK 1084
>U41549-3|AAA83283.2| 245|Caenorhabditis elegans Hypothetical
protein F22F1.3 protein.
Length = 245
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +1
Query: 52 QLLMQNLKSRPLRRIRIHQFDKL 120
+LL N KSR RRIRIH DKL
Sbjct: 127 RLLKPNAKSRITRRIRIHVIDKL 149
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +3
Query: 60 NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 239
NAK + E+K T I++ ++ + ++ K +L + ++ +EL S QK
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424
Query: 240 KYDEVAQTLEFARDLSKQ 293
K E+ + L+ A+ S +
Sbjct: 425 KIQELEKELQNAQKRSSE 442
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +3
Query: 60 NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 239
NAK + E+K T I++ ++ + ++ K +L + ++ +EL S QK
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424
Query: 240 KYDEVAQTLEFARDLSKQ 293
K E+ + L+ A+ S +
Sbjct: 425 KIQELEKELQNAQKRSSE 442
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 51 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 206
S+ S PAS+ D DT +R+I +E +++ ++ + + +R + G+
Sbjct: 9 SSRAMSSASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60
>AF067940-2|AAC19203.1| 219|Caenorhabditis elegans Hypothetical
protein F36F12.4 protein.
Length = 219
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 6 PRRNPRKVVCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR 185
PRR+ ++ V L ++ + N + + +E+ Q T ++ I NLE K + T+
Sbjct: 73 PRRDTQRAVNLPQIWPSQNGLARRIQKTENSP----QKFTNLQDTIENLEALKFRNTTRT 128
Query: 186 DLQKAGKELNSDQKVAVAKY 245
+ ++ K + + VAV Y
Sbjct: 129 QIWESSKSIYRPEMVAVQTY 148
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Frame = -3
Query: 511 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 359
S+ ++++S+V+ + PF F+ K+ L S++ + Q ISK + +LLV+ A
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268
Query: 358 TQASFLACFFASRSEEIAIAVTCFERSLANS 266
+ ++ FAS + V +E N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Frame = -3
Query: 511 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 359
S+ ++++S+V+ + PF F+ K+ L S++ + Q ISK + +LLV+ A
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268
Query: 358 TQASFLACFFASRSEEIAIAVTCFERSLANS 266
+ ++ FAS + V +E N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Frame = -3
Query: 511 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 359
S+ ++++S+V+ + PF F+ K+ L S++ + Q ISK + +LLV+ A
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268
Query: 358 TQASFLACFFASRSEEIAIAVTCFERSLANS 266
+ ++ FAS + V +E N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,472
Number of Sequences: 27780
Number of extensions: 250541
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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