Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C21
         (870 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       29   0.048
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    29   0.048
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.77 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 564 YACNNTGTFQSHMLSHCQVLGCS-QECQHICSTAENQEFHLNR 439
           Y C N     SHM SH  V   S ++C +      + + HL R
Sbjct: 266 YTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLRR 308


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 564 YACNNTGTFQSHMLSHCQVLGCS-QECQHICSTAENQEFHLNR 439
           Y C N     SHM SH  V   S ++C +      + + HL R
Sbjct: 24  YTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKIHLRR 66


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 644 TTELSPGPSPRPPASEINGVLGPGPAHQ 727
           TTE  P P+   P +E++G + P    Q
Sbjct: 453 TTEAPPAPAVSNPQNEVDGSVAPKECKQ 480


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 516 SARACGSGKYLCCYKRKQSNKVNSYQSEYFNEVEDERPML 635
           ++R    G +  CY R  +      +S +    +D+ PM+
Sbjct: 144 TSRTSACGLFSVCYPRVSAQMKADLRSHFRALCQDDTPMV 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,089
Number of Sequences: 336
Number of extensions: 4290
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)