Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C21
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 31 0.21
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 31 0.21
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 28 2.0
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 2.6
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 26 6.1
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 6.1
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 6.1
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 8.0
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 26 8.0
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 26 8.0
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 497 LQPKTWQCESMWLWKVPVLLQA*AEQQSKFISVRILQRSGRRASHA 634
L+ T++ + W+ P +L QQSK I V+ + R+ASHA
Sbjct: 815 LRNTTFEAAGSYGWRSPEILSGSLSQQSKEIQVKTREGRIRQASHA 860
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = -2
Query: 512 RSWVAVRSV------NTFAVLQRIKSSI*IVVFRYINSQNSLTLNSVWRLCVLFHSYWIP 351
R+WV +R + N++ + RI S+ + N ++ L+L SVW+ HS W P
Sbjct: 321 RNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVWQ-----HSVWRP 375
Query: 350 SLSLGSVIEAFS 315
SL+ V+ +FS
Sbjct: 376 SLAYLQVVYSFS 387
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +3
Query: 441 DSDGTLDSLQYCKCVDTPDCNPRPG-SARACGSGKYLCCYKRKQSNKVNSYQSEYFNEVE 617
D D LD + + P+C P PG RAC K C R+ +S S V+
Sbjct: 166 DEDELLDESAHDNVLKVPECKPEPGKKKRAC---KNCTCGLREMEEHESSKTSAQLEAVK 222
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 159 VERNSGSPXEQ--SSASLRIDTKVKFIDSRGDDVRSHRESKVQADEIPF--REPEETEGF 326
V NS S E SSA R I + + SH++ K+Q + IPF R+ ET
Sbjct: 98 VRENSVSSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQRESIPFHKRDNIETSDA 157
Query: 327 YNRPQGEGRYPVRVE 371
Y+ E P +V+
Sbjct: 158 YSSSILENSPPNKVQ 172
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 255 RSHRESKVQADEIPFREPEETEGFYNRPQGEGRYPVRVEEHAQSP 389
R HR+S ++ + +PE T G +P+ G + EE ++P
Sbjct: 44 REHRKSLLEGEVDGTLDPEMTHG--TKPKEHGEFDTDDEEEEENP 86
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 159 VERNSGSPXEQSSASLRIDTKVK-FIDSRGDDVRSHRESKVQADEIP 296
+E+N S S ASL +T K F++ ++ ++ R+ + Q + P
Sbjct: 37 IEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDLRKQLPDRP 83
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 237 SRGDDVRSHRESKVQADEIPFREPEE---TEGFYNRPQGEGRYPVRVEEHAQSP 389
S G DVR H S A+ R PE T+ + +G +VEE+ Q P
Sbjct: 527 SSGLDVREHEGSDDDAEVFVDRSPESFGATKVAHTSLEGNAASHKKVEENMQQP 580
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 240 RGDDVRSHRESKVQADEIPFREPEETEGFYNRPQ 341
R D E K ++P REP+ F N P+
Sbjct: 423 RNKDAEDIYEEKELESKVPIREPKSFADFKNHPE 456
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 354 YPVRVEEHAQSPYRVQSQAVLTVDVP 431
YP+ +EE Q PYR QS +VP
Sbjct: 32 YPMNLEEKNQIPYRFQSVPDDVPEVP 57
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 377 VLFHSYWIPSLSLGSVIEAFSFFWFTKR 294
VL+ ++ PS +L + AF WFTK+
Sbjct: 661 VLYVHHYEPSYALSTFTAAFVVDWFTKK 688
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,051
Number of Sequences: 5004
Number of extensions: 70020
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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