Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C21
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 34 0.17
06_03_0239 - 18582930-18583030,18583137-18583205,18583338-18583590 32 0.52
06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611 32 0.69
03_06_0736 + 35861265-35862047 31 1.6
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 30 2.1
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 29 4.8
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 29 4.8
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167... 29 4.8
04_01_0615 - 8060085-8060972 29 6.4
08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575 28 8.5
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 28 8.5
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 186 EQSSASLRIDTKVKFIDSRGDDVRSHRESKVQADEIPFREPEETEGFYNRPQGEGRYPVR 365
E++S ++ ID + +DS GD+ + + I E E F N QG+ +P+R
Sbjct: 2 EETSIAIEIDGEAICLDSVGDNEEQGTQENQEIQIIYDAENEGQVAFDNGEQGKEEHPMR 61
Query: 366 VEEHAQ 383
EE Q
Sbjct: 62 NEEENQ 67
>06_03_0239 - 18582930-18583030,18583137-18583205,18583338-18583590
Length = 140
Score = 32.3 bits (70), Expect = 0.52
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 603 SILTDMNLLCCSAYACNNTGTFQSHMLSHCQVLGCSQECQHICS 472
S + D +L C++ C+N TF + + V C++ C H C+
Sbjct: 87 SDVLDFCMLGCTSSMCSNMNTFADNEEGNVVVERCNEACYHFCN 130
>06_03_0241 - 18607950-18608050,18608158-18608226,18608374-18608611
Length = 135
Score = 31.9 bits (69), Expect = 0.69
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 591 DMNLLCCSAYACNNTGTFQSHMLSHCQVLGCSQECQHICS 472
D +L C++ C+N TF + + V C++ C H C+
Sbjct: 86 DFCMLGCTSSVCSNINTFAGNEEGNGAVERCNEACYHFCN 125
>03_06_0736 + 35861265-35862047
Length = 260
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 617 RRASHAIAGTTELSPGPSPRPPASEINGVLGPGPAHQVGL 736
RR S +T LSPGP+ P + ++G L PA+++ L
Sbjct: 115 RRVSLTYTHSTTLSPGPAKLPARTALDGSLTFDPANKLSL 154
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 623 ASHAIAGTTELSPGPSPRPPASEINGVLGP 712
AS AG LSP PSP P A N L P
Sbjct: 197 ASTTTAGPGPLSPSPSPLPRAGAANAYLNP 226
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 608 RSGRRASHAIAGTTELSPGPSPRPPASE 691
RS R H G LSP SP PPA++
Sbjct: 64 RSRRHGHHRDGGRRSLSPSESPPPPAAK 91
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 253 SDPTVNPRCKQTRSRFVNQKKLKASITDPREREGIQ 360
S PT+ C++ S F Q++ + +I P++ Q
Sbjct: 777 SKPTIEDACRENSSHFPKQRRTQTTIVQPKDPAATQ 812
>04_04_0396 +
24915880-24916222,24916318-24916577,24916689-24916784,
24916889-24917059,24917262-24917975
Length = 527
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 410 SLTLNSVWRLCVLFHSYWIPSLSLGSVIEAFSFFWFT 300
+L VWR CV Y SLSL I+A F+W+T
Sbjct: 248 TLKCAEVWRPCV----YMYVSLSLSLDIQAGMFYWYT 280
>04_01_0615 - 8060085-8060972
Length = 295
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 566 AEQQSKFISVRILQRSGRRASHAIAGTTELSPGPSPRPPASEINGVLGPGP 718
A K + + R+G A A TT +P P P P +E+ L P
Sbjct: 25 AAGHDKVTELVLALRAGFEAKRAAVETTPTTPSPMPTLPKAEVQQPLATAP 75
>08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575
Length = 358
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 133 VVTAGSGSEWREIPVPRXNSLQRLC 207
V T G + WR++P P +S ++ C
Sbjct: 251 VYTLGEAASWRDVPAPAGSSRRKSC 275
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 566 AEQQSKFISVRILQRSGRRASHAIAGTTELSPGPSPRPPASEINGVLGPGP 718
A++Q + +++ I + ++A G + +P PP S NG GP P
Sbjct: 599 AKEQEQLLAIDIANANANANANAAPGPPPMMANAAPVPPPSMANGA-GPVP 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,177,544
Number of Sequences: 37544
Number of extensions: 515844
Number of successful extensions: 1828
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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