BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP02_FL5_C21 (870 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) 32 0.53 SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 31 1.2 SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_34673| Best HMM Match : UK (HMM E-Value=0.6) 30 2.1 SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19) 30 2.8 SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 3.7 SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7 SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32) 29 4.9 SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5 SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 28 8.6 SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.6 SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0) 28 8.6 SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6 SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6 >SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) Length = 602 Score = 32.3 bits (70), Expect = 0.53 Identities = 15/57 (26%), Positives = 32/57 (56%) Frame = +3 Query: 180 PXEQSSASLRIDTKVKFIDSRGDDVRSHRESKVQADEIPFREPEETEGFYNRPQGEG 350 P ++S S++ K+ F+D G+ + + + K +A IP+R+ + T+ + G+G Sbjct: 80 PDDESGFSIQRHGKLSFVDLAGNCISALSDQKKRAGHIPYRDSKLTKLLADSLGGDG 136 >SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) Length = 888 Score = 31.1 bits (67), Expect = 1.2 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +3 Query: 360 VRVEEHAQSP-YRV-QSQAVLTVDVPKNYDSDGTLDSLQYCKCV 485 V+ +H Q P YR+ Q+QAV TV + DS DS Q+ +CV Sbjct: 388 VQTTQHRQCPPYRLYQAQAVRTVQTLPSTDSAHRTDSTQHRQCV 431 >SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 394 Score = 30.3 bits (65), Expect = 2.1 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Frame = +3 Query: 216 TKVKFIDSRGDDVRSHRESKVQ-ADEIP--FREPEETEGFYNRPQGEGRYPVRVEEHAQS 386 ++VK + S +++ RE + + +IP F+E +P+ GR + + E Sbjct: 64 SRVKKLKSATQNIQEEREEEGRDIKKIPPCFKEQTHQPEVTTQPRRSGRKHISIFERRIR 123 Query: 387 PYRVQSQAVLTVDVPKNYDSDGTLDSLQYCKCVDTPDCNPRPGSARA-CGSGKYLC 551 Y D P+ +D+D D C T D NP P G+GK C Sbjct: 124 DYSHHLDRKTPRDYPRAHDTDQPSD-----PCQRTADQNPYPTQRDPHPGAGKRTC 174 >SB_34673| Best HMM Match : UK (HMM E-Value=0.6) Length = 641 Score = 30.3 bits (65), Expect = 2.1 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Frame = +3 Query: 171 SGSPXEQSSASLRIDTKVKFID--SRGDDVRSHRESKVQADEIPFREPEETEGFYNRPQG 344 + +P + R+D + D R + + + +A P R PEET +RPQ Sbjct: 69 TNTPDRPQEETNRLDRPQEITDVPERPQEAKDEPDRPQEATHEPDR-PEETTDVPDRPQE 127 Query: 345 EGRYPVRVEEHAQSPYRVQSQAVLTVDVP-KNYDSDGTLDSLQYCKCVDTPD 497 P R +E +P R Q T D P ++++ T D Q + D+PD Sbjct: 128 VTTTPDRPQEANDAPDRPQE----TNDAPERSHEVTNTPDKPQ--EVTDSPD 173 >SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19) Length = 698 Score = 29.9 bits (64), Expect = 2.8 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = +2 Query: 602 LQRSGRRASH---AIAGTTELSPGPSPRPPASEINGVLGPGPA 721 ++R+ R H AI+G + P PS RPP E G PGPA Sbjct: 552 IRRNRRALVHEPVAISGESSSLPSPSNRPPVRE-GGEGSPGPA 593 >SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) Length = 300 Score = 29.5 bits (63), Expect = 3.7 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 450 GTLDSLQYCKCVDTPDCNPRPGSARACGSGKY 545 G +D Q+C C + CNP G C SG Y Sbjct: 181 GGVDCRQHCNCTEWGTCNPFTGKC-LCQSGFY 211 >SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1488 Score = 29.5 bits (63), Expect = 3.7 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -1 Query: 552 NTGTFQSHMLSHCQVLGCSQECQHICSTAENQEFHLNRSF*VHQQSKQLDSELCMETV-R 376 +T TFQSH+++ C C T Q + R+ H S+ + L T+ R Sbjct: 726 HTHTFQSHLVTPCDTHTFQSHLVTPCHTRTFQSHPVTRTLSSHTLSRPVTRTLSSHTLSR 785 Query: 375 ALPLLLDTFPL 343 + L FP+ Sbjct: 786 PVTRTLSNFPV 796 >SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32) Length = 228 Score = 29.1 bits (62), Expect = 4.9 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 13 QQRARGALAFNVHSSLIN*FTFANVCDSFFVNH*KYVC 126 Q++ +G + F+V ++ A VCD +FV+ + +C Sbjct: 5 QRQKQGGIVFHVFVAIYTFAALATVCDEYFVSSLERIC 42 >SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1894 Score = 28.7 bits (61), Expect = 6.5 Identities = 12/45 (26%), Positives = 25/45 (55%) Frame = +3 Query: 276 VQADEIPFREPEETEGFYNRPQGEGRYPVRVEEHAQSPYRVQSQA 410 VQ + PFR ++T+ +++P + + R + Q P+R + Q+ Sbjct: 613 VQPPQQPFRADQQTQQPFHQPGQQPQQSFRPGQQPQQPFRPEQQS 657 >SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) Length = 956 Score = 28.3 bits (60), Expect = 8.6 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Frame = -1 Query: 465 ENQEF--HLNRSF*VHQQSKQLDSELCMETVRALPLLLDTFPLPGVCYRSLQFLLVHETG 292 E+QE +RSF Q S + S + + +D FPL +C + +H++ Sbjct: 633 ESQEITPQFHRSFQSFQDSSKKQSPRFLPPIFRCVAKVDFFPLTNIC----ELFHIHKSP 688 Query: 291 SRL-LAPWIHGGI*HRHR 241 + L + P IH G+ +H+ Sbjct: 689 ACLKIDPMIHRGLRQKHQ 706 >SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 587 Score = 28.3 bits (60), Expect = 8.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -1 Query: 531 HMLSHCQVLGCSQECQHICSTAENQEFHLNRSF*VHQQSKQLDSELCMETVRALP 367 H+L H L +C+ ICS + ++ LNR H +C+E V+ LP Sbjct: 347 HLLVHS--LEKPYQCE-ICSKSFTRKDCLNRHLMTHVDPSMRKKHVCLECVKVLP 398 >SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0) Length = 771 Score = 28.3 bits (60), Expect = 8.6 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 797 TFPVGFXVRPGSLVVYQMVRVNRLDERVPGQELRLFRK-QEXGGKG 663 +F GF R SLV ++M + R E++ E+ K Q+ G KG Sbjct: 90 SFETGFLCRTQSLVEFKMAELRRRTEKLVSDEVPFTGKSQDLGFKG 135 >SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 225 Score = 28.3 bits (60), Expect = 8.6 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +3 Query: 264 RESKVQADEIPFREPEETEGFYNRPQGEGRYPVRVEEHAQSP 389 R+ +V + +PFR E E + R + E P++ E P Sbjct: 99 RDGQVARNSVPFRTREARESEFTRAKQEAPQPIKPAEKPPKP 140 >SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 495 Score = 28.3 bits (60), Expect = 8.6 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Frame = -1 Query: 579 LCCSAYACNNTGTFQS--HMLSHCQVLGCSQECQHICSTAENQEFHLNRSF*VHQQSK 412 +CCS CN Q H L HC+ C+Q I +H++ VH S+ Sbjct: 170 MCCSVVHCNQAIELQPTYHPLCHCE--QCAQRQNIITKETGAHVYHVHNRTHVHISSE 225 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,372,276 Number of Sequences: 59808 Number of extensions: 574927 Number of successful extensions: 1867 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1847 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2491217872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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