Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C21
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.23 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.23 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.23 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.6  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 VRVEEHAQSPYRVQSQAVLTVDVPKN 437
           VR +E   +PYR ++ AV+  D+P N
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPIN 136


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 VRVEEHAQSPYRVQSQAVLTVDVPKN 437
           VR +E   +PYR ++ AV+  D+P N
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPIN 136


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 VRVEEHAQSPYRVQSQAVLTVDVPKN 437
           VR +E   +PYR ++ AV+  D+P N
Sbjct: 111 VRTKEEPHAPYRYEAVAVIHKDLPIN 136


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 573 CSAYACNNTGTFQSHMLSHCQV--LGCSQECQHICSTAENQEFHLNR 439
           CS Y+C N     SH+ SH  V    C+  C +      + + HL +
Sbjct: 22  CS-YSCVNKSMLNSHLKSHSNVYQYRCA-NCTYATKYCHSLKLHLRK 66


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 136 PQYNKHIFNDSQRNYHKH 83
           P  N + +N++  NY+KH
Sbjct: 87  PLSNNYNYNNNYNNYNKH 104


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 555 YKRKQSNKVNSYQSEYFNEVEDER-PMLLP 641
           Y    +N  N+Y+  Y+N +  E+ P+ +P
Sbjct: 338 YNNYNNNNYNNYKKLYYNIINIEQIPVPVP 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,666
Number of Sequences: 438
Number of extensions: 5601
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)