Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C21
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37340.1 68417.m05289 cytochrome P450 family protein Similar ...    31   1.0  
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    30   2.3  
At4g00200.1 68417.m00021 DNA-binding family protein contains a A...    29   4.0  
At2g46920.2 68415.m05861 protein phosphatase 2C family protein /...    29   4.0  
At2g46920.1 68415.m05860 protein phosphatase 2C family protein /...    29   4.0  
At1g07630.1 68414.m00818 protein phosphatase 2C family protein /...    29   5.3  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    28   7.1  
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro...    28   9.3  

>At4g37340.1 68417.m05289 cytochrome P450 family protein Similar to
           Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
          Length = 500

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 64  N*FTFANVCDSFFVNH*KYVCCTVVTAGSGSEWREI 171
           N    AN  +S    H  Y C TVVTA  G  WR +
Sbjct: 93  NDVVLANRFNSLASKHISYGCTTVVTASYGDHWRNL 128


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 303 EPEETEGFYNRPQGE-GRYPVRVEEHAQSPYRVQSQ 407
           EPEET G+Y   QG+  RY  R ++  +  +R + +
Sbjct: 378 EPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYERE 413


>At4g00200.1 68417.m00021 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 345

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 617 RRASHAIAGTTELSPGPSPRPPASEINGVLGP 712
           +R  HA A    + P PSP PPA+ +     P
Sbjct: 279 QRVEHAPAAVMSVPPPPSPPPPAASVFSPTNP 310


>At2g46920.2 68415.m05861 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 665 PSPRPPASEINGVLGPGPAHQVGLLGPFDTPQGFLVGP 778
           P PR  +  +NG +  GP  +    GP D   GF+ GP
Sbjct: 146 PLPRGGSGPLNGFMS-GPLERGFASGPLDRNNGFMSGP 182


>At2g46920.1 68415.m05860 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 665 PSPRPPASEINGVLGPGPAHQVGLLGPFDTPQGFLVGP 778
           P PR  +  +NG +  GP  +    GP D   GF+ GP
Sbjct: 146 PLPRGGSGPLNGFMS-GPLERGFASGPLDRNNGFMSGP 182


>At1g07630.1 68414.m00818 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 662

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +2

Query: 632 AIAGTTELSPGPSPRPPASEINGVLGPGPAHQVGLLGPFDTPQGFLVGP 778
           A   TT  S  P    P S    VLG GP  +  L GP +  +GF+ GP
Sbjct: 99  AFESTTSFSSIPLQPIPKSSGPIVLGSGPIERGFLSGPIE--RGFMSGP 145


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 608 RSGRRASHAIAGTTELSPGPSPRPPASEINGVLGPGPAHQVGLLG 742
           R G   S  +  +  + P P+P P +   NG + P P   +GL G
Sbjct: 650 RMGAPTSSLVLKSPPVPPPPAPAPLSRSHNGNIPPVPGPPLGLKG 694


>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 588

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 662 GPSPRPPASEINGVLGPGPAHQVG 733
           GP   PP  E NG  G G A+ VG
Sbjct: 473 GPKDLPPQLESNGARGSGSANSVG 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,679
Number of Sequences: 28952
Number of extensions: 393871
Number of successful extensions: 1217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)