Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C20
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    29   0.64 
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    29   0.85 
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.6  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   2.6  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    27   3.4  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.9  

>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 724 KRSVHPQDXVPLHT*DRXTLHPLEPSIDLQHAYRESL 614
           KR +  Q  VP+   D  TL P +P+ DL+   +E +
Sbjct: 77  KRKIEEQSSVPVEELDLVTLRPKKPTWDLERDLKERM 113


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
 Frame = +3

Query: 588 CLYHWGRVSSDSR-------YACCKSMLG-SRGCSVXRSHVW 689
           C YHWG++  + +       Y CC    G S GC +  +HV+
Sbjct: 313 CTYHWGKLFREKQGGEKIRTYTCCGVKEGDSSGCIIEDNHVF 354


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
 Frame = +3

Query: 330 PLEI-EPNSTKAVVYINPPPRPRPMTT----WDVNAPEFVPGSQGDSGRGSLGSTPRSDS 494
           P+EI +P   K   +++ P  P P       WD +AP  +P          L   P    
Sbjct: 239 PVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIP 298

Query: 495 DEEADAVE 518
           D EA   E
Sbjct: 299 DPEAQKPE 306


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 504 ADAVEHLCVRCDKMFRMTRD 563
           A+A+EH CVRC +   MT+D
Sbjct: 366 ANALEHACVRCVEKGIMTKD 385


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 255 LSTEQLAQALRSHFLSPKRMWTLGYPLEIEPNSTKAVVYINPPPRPRPMTTW 410
           LS + + Q +      PK   + G  L++ P +   +    P P+P+P T W
Sbjct: 43  LSRDNVQQLVNKMISLPKERTSDGVLLQL-PETVTPLPRAKPLPKPKPETKW 93


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 428 FRGIYIPRSHRSRSRRWIYVY 366
           F  +Y+PRSHR  S R  Y Y
Sbjct: 353 FSRLYVPRSHRRSSDRSHYSY 373


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 428 FRGIYIPRSHRSRSRRWIYVY 366
           F  +Y+PRSHR  S R  Y Y
Sbjct: 353 FSRLYVPRSHRRSSDRSHYSY 373


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +3

Query: 330 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 509
           P    P ++    Y  PPP P P    D  A    P     SGR      P + + ++AD
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQAD 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,155
Number of Sequences: 5004
Number of extensions: 60882
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)