Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C20
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557... 32 0.51
03_03_0215 - 15492934-15493023,15493449-15493547,15493578-154936... 32 0.51
11_02_0040 - 7665220-7666656 31 1.2
02_02_0402 - 9852407-9853519 31 1.6
04_04_1041 - 30329037-30329102,30329199-30329352,30329606-303297... 30 2.1
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 30 2.1
10_08_0787 + 20551290-20551530,20551615-20551725,20552573-205527... 29 3.6
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 29 3.6
06_03_0809 + 24814590-24816593 29 4.8
06_03_0447 + 20878444-20878821 29 6.3
>05_03_0502 -
14754532-14754851,14754959-14755042,14755553-14755709,
14756198-14756638,14757590-14757808,14757873-14758193
Length = 513
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 330 PLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEAD 509
P+E +P + PP P P T N + G + SG S S R+ S + D
Sbjct: 226 PVEWQPIDIDELTAAYTPPPPAPSTYGQSNGSK---GKRKASGETSGSSNKRTRSSDWGD 282
Query: 510 AVEHLCVRC 536
A++ L V C
Sbjct: 283 ALDRLSVLC 291
>03_03_0215 -
15492934-15493023,15493449-15493547,15493578-15493634,
15493635-15493902,15494019-15494086
Length = 193
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 378 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEADAVEHLCVRCDKMFRM 554
PP PR TT A + S G+SG+GS G SD D+ +A +R D++ R+
Sbjct: 23 PPQAPRATTTDGSGAGDHGSDSGGNSGKGS-GGGGGSDDDDCEEAEFGPLLRFDEVLRL 80
>11_02_0040 - 7665220-7666656
Length = 478
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 6/30 (20%)
Frame = +3
Query: 345 PNSTKAVVY---INPPPRPR---PMTTWDV 416
P+ST VV + PPPRPR P+T+WDV
Sbjct: 2 PSSTVRVVSTRTVKPPPRPRERIPLTSWDV 31
>02_02_0402 - 9852407-9853519
Length = 370
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +3
Query: 375 NPPPRPRPMTTWDVNAPEFVPGSQG---DSGRGSLGSTPRSDSDEEADAVEHLCVRCDKM 545
+PPP P P T + + +PG+ G G G G S + A A VR
Sbjct: 74 SPPPSPLPPTPFSSQVTKIIPGTDGVLFGGGGGQGGEASSSSLFKPAPAAPLPTVRTSSS 133
Query: 546 FRMTRDGEYVK 578
+ DG +K
Sbjct: 134 SAVAADGLKLK 144
>04_04_1041 -
30329037-30329102,30329199-30329352,30329606-30329733,
30329918-30330043,30330545-30330675,30331091-30331304,
30332056-30332061,30332216-30332246,30332410-30332867,
30332992-30333136,30333255-30333712,30336945-30337085,
30337146-30337158,30337611-30337636
Length = 698
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +3
Query: 378 PPPRPRP----MTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEADA 512
PPP R M TWD+ + G Q D+GR G+T +EEA A
Sbjct: 123 PPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGA 171
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +3
Query: 378 PPPRPRPMTTWDVNAPEFVPGSQGDSGRGSLGSTPRSDSDEEADAVEHLCVR 533
PPP P P T P P + G S S+ S DE+ D+ HL R
Sbjct: 129 PPPPPLPRPTSARATPATTPSADGSSS----SSSSTSGGDEDKDSFMHLVSR 176
>10_08_0787 +
20551290-20551530,20551615-20551725,20552573-20552700,
20552767-20552787
Length = 166
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 342 EPNSTKAVVYINPPPRPRPMTTWDVNAPEFV--PGSQGDSGRGSLGSTPRSDS-DEEADA 512
E KA+V+ PP +WDV + + GS+G SG GSL DS ++++A
Sbjct: 52 EARKGKAIVHACAPPGGPSSPSWDVFISQGIVHAGSRG-SGSGSLKELESGDSVSDDSNA 110
Query: 513 VEH 521
H
Sbjct: 111 PTH 113
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 173 GRVHRRDGLLIKPIVE 126
GRVH RDG+L++PI E
Sbjct: 51 GRVHLRDGILMRPIAE 66
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 318 TLGYPLEIEPNSTKAVVYINPPPRPRPMTTWDVNAPEFVPGSQGDSGR 461
T+ PL+ P V+ PP P P P VP S+ SGR
Sbjct: 232 TMLVPLKHRPKPDVTVLPEPGPPSPAPAPAVSAPPPPAVPSSESGSGR 279
>06_03_0447 + 20878444-20878821
Length = 125
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 378 PPPRPRPMTTW--DVNAPEFVPGSQGDSGRGSLG--STPRSDSDEEADAVEHLCV 530
PPP P P+TT D E VP S S R S G +T S + + H C+
Sbjct: 66 PPPPPLPLTTLPPDSGGGEGVPASYRRSCRASAGAKATATSILAPQTPPLRHRCL 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,912,215
Number of Sequences: 37544
Number of extensions: 457621
Number of successful extensions: 1559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -