Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C18
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 1.1
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 28 1.4
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 28 1.9
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 3.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 4.4
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 26 5.8
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 26 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.8
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 5.8
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 647 SPLKNCCGNSKRFMVLSSXALTPPQSRRDRDSVASELRSTSTMHSTSTPAPWHRRKKRAN 826
S + N G ++ + S PQ+ A+ STS STS+PAPW K ++
Sbjct: 378 SAISNGNGEPQKSIEFSESGAASPQAGHPPPWAAA---STSVSSSTSSPAPW--AKPASS 432
Query: 827 CAP 835
AP
Sbjct: 433 AAP 435
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 289 AIDLLTNDECRLLLEVEDFFN 351
+I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 422 STRHHRRS*NRVPPNSLTIFCSS*TVNANK 511
STR + N+VP N L I+C + NK
Sbjct: 74 STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 532 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETVYGAVEXRI 708
+E + D+ S N S +P+ P V+ SSP + P+ +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTISSYYSTDT 529
Query: 709 NTAAESXGPR 738
+ +A G R
Sbjct: 530 DVSANVMGNR 539
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 659 NCCGNSKRFMVLS-SXALTPPQSRRDRDSVAS--ELRSTSTMHSTSTPAPWHRRK 814
N G K F+ S + TP + ++D AS L S +TSTP +H RK
Sbjct: 77 NSVGPKKPFLDYHHSTSNTPTKKKKDSFDHASVTSLHRRSLSSNTSTPRKYHSRK 131
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 130 ILCVKAHAGVQTIRY*KPIVIAKLHEKTKIRLLTAS 23
++ +A G+ T+ Y P+ +A LH+ + LTA+
Sbjct: 422 VVTAQATLGIMTLIYVVPVPLAALHQAGSLVTLTAA 457
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 5.8
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +3
Query: 51 FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 224
F C I++ F I A A H I L + P +D H K I+P LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366
Query: 225 FAFVELNHYNNECESEGVMGCGHRF 299
F F E NH +++ ++ G ++
Sbjct: 367 FQFQEQNHIHHKKIRRKLLAAGWKW 391
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 713 PPQSRRDRDSVASELRSTSTMHSTSTPAP 799
PP S D+ +S L +TST +TST P
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTSCTTSTSIP 236
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 713 PPQSRRDRDSVASELRSTSTMHSTSTPAP 799
PP S D+ +S L +TST +TST P
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIP 292
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 395 RSKSITPRVSTRH--HRRS*NRVPPNSLTIFCSS*TVNANKRIFSPTG*RKKLTSLRSSK 568
R + PRV+ + + + N + N+ ++ T+N ++R+ +P+G R L S
Sbjct: 529 RGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSP 588
Query: 569 TFLKFLNAWTHNPRQ 613
LN H RQ
Sbjct: 589 ASYDSLNVPKHRRRQ 603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,332
Number of Sequences: 5004
Number of extensions: 62461
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -