Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C18
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.50 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 671 NSKRFMVLSSX--ALTPPQSRRDRDSVASELRSTSTMHSTSTPAPWHRR 811
           +S+ ++ + S    L  P  + D D   S + S ++++STS+P P+ RR
Sbjct: 376 SSQNYLTVHSFPSTLNIPSVKIDEDQKCS-IESITSVNSTSSPKPFPRR 423


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 843 TGTGAQFARFLRRCQGAGVLVLCIVLVERNSEATESRSRRLCGGVNAXLDSTINRFEFPQ 664
           +GT  QF   + RC  AGV +   V++        S  R    G      +T N F++PQ
Sbjct: 91  SGTREQFIDMVARCNKAGVRIYVDVIMNH-----MSGDRNDAHGTGNSRANTYN-FDYPQ 144

Query: 663 QFFSGLRGHKR 631
             ++    H R
Sbjct: 145 VPYTVKNFHPR 155


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +2

Query: 113 CLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLW---TFIRIRGTKSLQQ 256
           C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 719 QSRRDRDSVASELRSTSTMHSTSTPAPWHRRKKRANC 829
           Q  ++RD   SE+ STS++HS          +KR  C
Sbjct: 185 QRTKERDQ--SEVESTSSLHSDMPIERILEAEKRVEC 219


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 719 QSRRDRDSVASELRSTSTMHSTSTPAPWHRRKKRANC 829
           Q  ++RD   SE+ STS++HS          +KR  C
Sbjct: 185 QRTKERDQ--SEVESTSSLHSDMPIERILEAEKRVEC 219


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 390 CSARKVFKQITIIIEEILNFEQQTALIVSEQID 292
           CS   V   IT + + +  F ++ AL +SE ++
Sbjct: 135 CSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 823 CTLLAAVPGSWSASAVHXXXXX*LRSN*VAVPXTLRRC 710
           CT +A  P S    A+       L S   A   T+R+C
Sbjct: 217 CTYVALYPSSVQVIALGVGVSNFLSSTRTAETGTIRKC 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,279
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)