Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C17
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   8.2  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 423  ATFAQFFGSASPFQEFFDLNGGG 491
            AT     G+ +P +E  D+NGGG
Sbjct: 1550 ATLTVTGGTIAPARELPDVNGGG 1572


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 368 EWSWWRSIIFLHVPRRPESNVRAVLWFGQPVPGILRSEWRWN 493
           E+  WR    ++  R+P +N  +V W          S W+WN
Sbjct: 144 EYYVWRDARIVNGTRQPPNNWLSVFW---------GSAWQWN 176


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 591 RSHSFNFHGSPSRKEKTQDPPSNTIYTYH*KISPVVCVK 707
           R H +NF   P   E     P + +Y    + SP  C K
Sbjct: 54  RRHRYNFQLKPYNPEHKPPGPKDLVYL---EPSPPFCEK 89


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 591 RSHSFNFHGSPSRKEKTQDPPSNTIYTYH*KISPVVCVK 707
           R H +NF   P   E     P + +Y    + SP  C K
Sbjct: 55  RRHRYNFQLKPYNPEHKPPGPKDLVYL---EPSPPFCEK 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,325
Number of Sequences: 438
Number of extensions: 5010
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)