Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C14
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil...    29   5.3  
At1g44750.2 68414.m05127 purine permease family protein similar ...    29   5.3  
At1g44750.1 68414.m05126 purine permease family protein similar ...    29   5.3  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    28   9.3  

>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
           to apospory-associated protein C; APOC [Chlamydomonas
           reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
           1-epimerase
          Length = 318

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 473 SYHSAPVAKIVAHQAEEIA-YP-KYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSF 637
           S  +A V  IV    E++  +P K+EY   VA GH GD      V++ D    +++F
Sbjct: 127 SLSTAHVDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFTF 183


>At1g44750.2 68414.m05127 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 367

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 673 VLNSSDRAVSFVERV*TLHYITVAYLLLGLVIAGVTISY 557
           +L  S  +V   E   +L YI + Y+LLG++IAG  + Y
Sbjct: 82  LLLPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLY 120


>At1g44750.1 68414.m05126 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 379

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 673 VLNSSDRAVSFVERV*TLHYITVAYLLLGLVIAGVTISY 557
           +L  S  +V   E   +L YI + Y+LLG++IAG  + Y
Sbjct: 94  LLLPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLY 132


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 515 AEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRT----VEYTAD 682
           A + A PK  YN   AD  +      +E  DGD    S    E D ++ +     + T D
Sbjct: 403 AVDWAVPKNIYN-GAADATTASADGDKEGSDGDSENSSVDLEEVDEAVESHPPPGDDTDD 461

Query: 683 DHSGFNAVVXNTA 721
           D  G N +  + A
Sbjct: 462 DEDGSNKLTESDA 474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,947
Number of Sequences: 28952
Number of extensions: 209818
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)