BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP02_FL5_C14 (868 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil... 29 5.3 At1g44750.2 68414.m05127 purine permease family protein similar ... 29 5.3 At1g44750.1 68414.m05126 purine permease family protein similar ... 29 5.3 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 28 9.3 >At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar to apospory-associated protein C; APOC [Chlamydomonas reinhardtii] GI:6970044 Pfam profile PF01263: Aldose 1-epimerase Length = 318 Score = 28.7 bits (61), Expect = 5.3 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +2 Query: 473 SYHSAPVAKIVAHQAEEIA-YP-KYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSF 637 S +A V IV E++ +P K+EY VA GH GD V++ D +++F Sbjct: 127 SLSTAHVDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFTF 183 >At1g44750.2 68414.m05127 purine permease family protein similar to purine permease [Arabidopsis thaliana] GI:7620007; contains Pfam profile PF03151: Domain of unknown function, DUF250 Length = 367 Score = 28.7 bits (61), Expect = 5.3 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -1 Query: 673 VLNSSDRAVSFVERV*TLHYITVAYLLLGLVIAGVTISY 557 +L S +V E +L YI + Y+LLG++IAG + Y Sbjct: 82 LLLPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLY 120 >At1g44750.1 68414.m05126 purine permease family protein similar to purine permease [Arabidopsis thaliana] GI:7620007; contains Pfam profile PF03151: Domain of unknown function, DUF250 Length = 379 Score = 28.7 bits (61), Expect = 5.3 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -1 Query: 673 VLNSSDRAVSFVERV*TLHYITVAYLLLGLVIAGVTISY 557 +L S +V E +L YI + Y+LLG++IAG + Y Sbjct: 94 LLLPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLY 132 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 27.9 bits (59), Expect = 9.3 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Frame = +2 Query: 515 AEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGDVVKGSYSFHEADGSIRT----VEYTAD 682 A + A PK YN AD + +E DGD S E D ++ + + T D Sbjct: 403 AVDWAVPKNIYN-GAADATTASADGDKEGSDGDSENSSVDLEEVDEAVESHPPPGDDTDD 461 Query: 683 DHSGFNAVVXNTA 721 D G N + + A Sbjct: 462 DEDGSNKLTESDA 474 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,753,947 Number of Sequences: 28952 Number of extensions: 209818 Number of successful extensions: 679 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 659 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 679 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 2028915200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -