Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_C13
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 79 6e-16
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 30 0.50
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 29 1.2
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 1.2
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 3.5
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 4.7
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 4.7
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 26 6.1
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 79.4 bits (187), Expect = 6e-16
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%)
Frame = +2
Query: 230 LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY-------- 385
L K++ PG +LG++ ++ + + VS+P L G V +IS+ + L++
Sbjct: 101 LRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNA 160
Query: 386 ---VEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTM--------LTTMPQHVN-SGKRH 529
ED ++ +L ++K GQ++ VSV L NT L+ PQ N S
Sbjct: 161 ATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEA 220
Query: 530 TEIKKGAIFQAAVSSVEDHGYVMDLGIPNTTAFLPXKDANPEIXLDTGMVCWCAVXSGE 706
+ G++ QA VSS+EDHG V D+GI N T FL K N + G C+V S E
Sbjct: 221 ADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHIN-DFPFVEGQSLLCSVISKE 278
Score = 31.5 bits (68), Expect = 0.16
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +2
Query: 239 KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEA-YVEDKTEKVRE 415
++L PG L+G+V +V++ + +P + G V + + Y+ L E + + V
Sbjct: 1048 ENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCV 1107
Query: 416 LSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTEIKKGAIFQAAVSSVEDHGYV 595
LS + P + +A+S + + + +NS ++K G I + V +V + G
Sbjct: 1108 LS-VDVPNRKVALSARNSRTQSQPVEIKDKEINS---VDDLKIGDICRGFVCNVANQGLF 1163
Query: 596 MDLG 607
+ +G
Sbjct: 1164 VTIG 1167
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 558 WNMAPFLISVCRFPLFTC*GIVVSMVLPGASSTTLTAMY 442
W + F+ +V FP+F C I+V +LP S T +++
Sbjct: 568 WTVIYFIFNV-PFPVFLCYDILVETILPAGSQTLTDSVF 605
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 176 DEAQDYLKTHKLNNNLIFLSSKSLRP-GINLLGRVIHVSDVKIKVSMPCKLLGNVMACHI 352
DEA+ ++ T L N++ + L P G++ LG V+H + I + LG V HI
Sbjct: 227 DEAKQFVVTRLLQRNVV-IELLDLAPNGVSFLGNVLHPAG-NIATFLLSSGLGRVADNHI 284
Query: 353 S 355
S
Sbjct: 285 S 285
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 6 SVKEDWQTRKNTFREVERSLPVHILSRVATF 98
+V +DW +N+F ++ +L VH+LS F
Sbjct: 559 TVLDDWNFSENSFLSIKENLFVHVLSLFKAF 589
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 347 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQ 505
H+ K L+AY E+ E+ R+ +F P +EL LT P+
Sbjct: 477 HLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIELEDRTLTLTVTPE 529
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 173 SDEAQDYLKTHKLNNNLIFLSSKSLRPGIN 262
+DEA L + NN IFL +LRP ++
Sbjct: 911 ADEASRQLVWQAIENNEIFLDPHTLRPNVD 940
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 278 IHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQ 442
+H + M +L G +M + Y++ +ED TE + L F+PGQ
Sbjct: 41 VHAIVTEETAPMALRLSGQLML-GVVRIYSRKARYLLEDCTEALMRLKMSFQPGQ 94
>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 194 LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 361
L+ HK +FL S + P I LL + VS + +S+ +L N++A H++ S
Sbjct: 142 LQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMS 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,183
Number of Sequences: 5004
Number of extensions: 53041
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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