Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C13
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.13 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 548 AIFQAAVSSVEDHGYVMDLGIP 613
           ++ QAA SSV D  Y+++LG P
Sbjct: 408 SVIQAATSSVSDDLYLLELGFP 429


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 224 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 340
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 224 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 340
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 653 RDWHLXSAGTLLC*VCRGPL 594
           RD HL    TL C V RG L
Sbjct: 620 RDLHLGERTTLTCSVTRGDL 639


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 IFLSSKSLRPGINLLGRVIHVSD 292
           IFLS+KSLR   NL    + +SD
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISD 64


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 558 KQQCHQLKITGM*WTSAY 611
           K+ C+QL I  + W SA+
Sbjct: 498 KRGCYQLAINHIRWNSAF 515


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 558 KQQCHQLKITGM*WTSAY 611
           K+ C+QL I  + W SA+
Sbjct: 588 KRGCYQLAINHIRWNSAF 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,465
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)