Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C12
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.5  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   2.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   7.9  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 478 HDKQLQFMDYANLLPYQKWDAHLAGSESGVESVTLSALSAEASEWRTSQDGQRILTTTPS 657
           HD + +  D++ L  Y+       G E    S TLS+  + AS    S    R  TTTP+
Sbjct: 336 HDMRNRSFDHSTLAHYEAVKQQRLGVEPTARSFTLSSYKSRAS--GNSLINDRSSTTTPT 393

Query: 658 VLGG-CRAQVYRAAGATQWYTAVI 726
            +     + V++     + Y A++
Sbjct: 394 FVNSEASSPVHKNKRRRRIYAALL 417


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 375 GSPXLKSFLLKTREKFVANTQLPTRVVAILHH 280
           GSP L+  L++ + ++     L T+  A++HH
Sbjct: 215 GSPALEELLVELKPRYWMAAHLHTKFTAVVHH 246


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -3

Query: 483 VMQIFHWLGVSLYRQVSCKLCECQRWPLHFFSL 385
           ++Q + W   ++Y Q  C++C+ +  P+H + +
Sbjct: 285 LLQQYPWQRPNIY-QTFCEICKMRNVPIHIYDI 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,780
Number of Sequences: 5004
Number of extensions: 66361
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)