Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C12
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    30   2.7  
02_02_0176 - 7477344-7477625                                           29   6.3  
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545...    28   8.3  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    28   8.3  

>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 216 VIRAASLRDNKNKELQVLVEYDGVEWQRRE----WVAVYSRRTFR 338
           V R A  R++  +++  L+ YD + W  RE    W A+Y R  F+
Sbjct: 588 VKRRAGRRNDGRRKVLGLLHYDSIGWCLREELERWKAIYQRENFQ 632


>02_02_0176 - 7477344-7477625
          Length = 93

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -1

Query: 461 WASASIVRSAASCVNVN---AGHCTSFPSTVLGAQX*SPFY*KHAKSSSRIHSYPLASLP 291
           WA+ S VR+ A  +  N   AG C+ F  +       S      A S SR+  Y L   P
Sbjct: 4   WAAKSRVRATAGWLLSNGGDAGRCSPFDCSSSIPLPWSRGRDNGAPSKSRVKCYGLCLTP 63

Query: 290 FYTIVF 273
            Y IVF
Sbjct: 64  KYLIVF 69


>07_01_0714 -
           5451246-5451408,5453401-5453534,5453608-5453796,
           5454313-5454825,5455815-5456856,5457283-5457380,
           5458224-5458451
          Length = 788

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 458 ASASIVRSAASCVNVNAGHCT 396
           A+A  +R+AA CV ++ GHC+
Sbjct: 353 AAAGGLRAAAECVQISLGHCS 373


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 379 TVEGKEVQWPALTFTQLAADLTIEADAQPVEYLHDKQLQFMDYANLL-PYQKWDAHLAGS 555
           TV    VQ+  +  + ++    I   A+P E  +D++  F+D+ NL+ P  +   H    
Sbjct: 281 TVTAASVQFKEMGGSSISRSRAIADAAKPPEQQNDRRKNFLDWRNLMKPMNEEKDHWVPD 340

Query: 556 ESGVESVTLSA 588
           E+  +    +A
Sbjct: 341 EAVTKCTACTA 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,915,215
Number of Sequences: 37544
Number of extensions: 474114
Number of successful extensions: 1126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)